Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16577448..16580419-chr21:16741231..16743015,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10211859	0.90[EUR][1000 genomes]
rs12626910	1.00[JPT][hapmap]
rs12626957	1.00[JPT][hapmap]
rs17241270	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2049835	0.90[EUR][1000 genomes]
rs2049882	0.90[EUR][1000 genomes]
rs2091947	0.96[EUR][1000 genomes]
rs2823234	0.96[EUR][1000 genomes]
rs2823235	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2823236	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2823237	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2823238	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2823239	0.90[EUR][1000 genomes]
rs2823242	0.93[EUR][1000 genomes]
rs2823244	0.92[EUR][1000 genomes]
rs28478640	0.89[EUR][1000 genomes]
rs6517365	0.85[EUR][1000 genomes]
rs6517383	0.90[EUR][1000 genomes]
rs7278751	0.90[EUR][1000 genomes]
rs7280494	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7281880	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8128176	0.90[EUR][1000 genomes]
rs9980544	0.86[EUR][1000 genomes]
rs9982882	0.89[EUR][1000 genomes]
rs9982903	0.90[EUR][1000 genomes]
rs9983155	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv834049	chr21:16717421-16905300	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv3460	chr21:16741994-16760719	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16738600-16747600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr21:16740000-16742600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr21:16740600-16742800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr21:16740800-16743400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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