Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10211859	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17241270	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2049835	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2049882	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2091947	0.92[EUR][1000 genomes]
rs2823234	0.92[EUR][1000 genomes]
rs2823235	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2823236	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2823237	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2823238	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs2823239	0.86[EUR][1000 genomes]
rs2823242	0.97[EUR][1000 genomes]
rs2823244	0.83[EUR][1000 genomes]
rs28478640	0.99[EUR][1000 genomes]
rs6517365	0.81[EUR][1000 genomes]
rs6517383	1.00[EUR][1000 genomes]
rs7278751	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7279326	0.90[EUR][1000 genomes]
rs7280494	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs7281880	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9980544	0.96[EUR][1000 genomes]
rs9981613	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9982882	0.99[EUR][1000 genomes]
rs9982903	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9983155	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1812556	chr21:16690063-16736368	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv834049	chr21:16717421-16905300	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16724000-16726600	Enhancers	Primary hematopoietic stem cells	blood
2	chr21:16724200-16726800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr21:16725200-16738200	Weak transcription	HepG2	liver
4	chr21:16725600-16728600	Enhancers	HUVEC	blood vessel
5	chr21:16725800-16726800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr21:16725800-16728000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr21:16726400-16727000	Enhancers	Spleen	Spleen

Quick Search: