Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10211859	0.92[EUR][1000 genomes]
rs17241270	0.92[EUR][1000 genomes]
rs2049835	0.92[EUR][1000 genomes]
rs2049882	0.92[EUR][1000 genomes]
rs2091947	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823234	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823235	0.92[EUR][1000 genomes]
rs2823236	0.92[EUR][1000 genomes]
rs2823237	0.92[EUR][1000 genomes]
rs2823238	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2823239	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2823242	0.89[EUR][1000 genomes]
rs2823244	0.88[EUR][1000 genomes]
rs28478640	0.90[EUR][1000 genomes]
rs6517365	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6517383	0.92[EUR][1000 genomes]
rs7278751	0.92[EUR][1000 genomes]
rs7279326	0.96[EUR][1000 genomes]
rs7280494	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7281880	0.92[EUR][1000 genomes]
rs8128176	0.92[EUR][1000 genomes]
rs9980544	0.90[EUR][1000 genomes]
rs9981613	0.80[EUR][1000 genomes]
rs9982882	0.93[EUR][1000 genomes]
rs9982903	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1056659	chr21:16646531-16709391	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1812556	chr21:16690063-16736368	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16697600-16706600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr21:16704600-16706600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr21:16705400-16706600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr21:16705600-16707200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr21:16706000-16706600	Enhancers	HSMMtube	muscle
6	chr21:16706000-16707200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr21:16706400-16706800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr21:16706400-16706800	Enhancers	Primary neutrophils fromperipheralblood	blood

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