Variant report
| Variant | rs9981613 |
|---|---|
| Chromosome Location | chr21:16723706-16723707 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10211859 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17241270 | 0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2049835 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2049882 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2091947 | 0.80[EUR][1000 genomes] |
| rs2823234 | 0.80[EUR][1000 genomes] |
| rs2823235 | 0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2823236 | 0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2823237 | 0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2823238 | 0.90[EUR][1000 genomes] |
| rs2823239 | 0.90[EUR][1000 genomes] |
| rs2823242 | 0.85[EUR][1000 genomes] |
| rs2823244 | 0.87[EUR][1000 genomes] |
| rs28478640 | 0.87[EUR][1000 genomes] |
| rs6517365 | 0.83[EUR][1000 genomes] |
| rs6517383 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7278751 | 0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7280494 | 0.90[EUR][1000 genomes] |
| rs7281880 | 0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8128176 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9980544 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9982882 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9982903 | 0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9983155 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1063385 | chr21:16521617-16926212 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064280 | chr21:16664312-17049272 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | esv1812556 | chr21:16690063-16736368 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv834049 | chr21:16717421-16905300 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:16723400-16725800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
