Variant report

Variant	rs72798212
Chromosome Location	chr10:46025712-46025713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:46017813..46021385-chr10:46021525..46026200,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28395868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv895111	chr10:45989745-46071900	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1041417	chr10:46021181-46088061	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv528750	chr10:46024620-46076235	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1052233	chr10:46024620-46088061	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46005400-46029800	Weak transcription	Fetal Kidney	kidney
2	chr10:46007800-46027400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:46008400-46027200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:46009400-46044400	Weak transcription	Thymus	Thymus
5	chr10:46010000-46027800	Weak transcription	Lung	lung
6	chr10:46010000-46056000	Weak transcription	Esophagus	oesophagus
7	chr10:46010200-46027200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:46010200-46028800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:46011400-46027200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:46011600-46030200	Weak transcription	HepG2	liver
11	chr10:46013200-46027400	Weak transcription	Left Ventricle	heart
12	chr10:46014000-46027400	Weak transcription	Fetal Intestine Small	intestine
13	chr10:46014400-46070000	Weak transcription	Psoas Muscle	Psoas
14	chr10:46015400-46025800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr10:46015600-46026000	Weak transcription	Aorta	Aorta
16	chr10:46015600-46043400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:46016000-46027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:46016200-46027400	Weak transcription	Liver	Liver
19	chr10:46017200-46027000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:46017800-46027200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:46017800-46029600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:46018000-46052800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:46018400-46027200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr10:46018400-46040400	Weak transcription	K562	blood
25	chr10:46018800-46027600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr10:46019200-46039200	Weak transcription	Fetal Intestine Large	intestine
27	chr10:46021200-46028000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr10:46021400-46028000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:46021800-46029400	Weak transcription	Brain Germinal Matrix	brain
30	chr10:46021800-46030200	Weak transcription	Primary B cells from cord blood	blood
31	chr10:46022000-46027000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:46022000-46027400	Weak transcription	Fetal Lung	lung
33	chr10:46022000-46027400	Weak transcription	Fetal Stomach	stomach
34	chr10:46022000-46027400	Weak transcription	Ovary	ovary
35	chr10:46022000-46027400	Weak transcription	Pancreas	Pancrea
36	chr10:46022000-46027400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr10:46022000-46027600	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:46022000-46027800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:46022000-46028800	Weak transcription	Placenta	Placenta
40	chr10:46022000-46029800	Weak transcription	Primary T cells from cord blood	blood
41	chr10:46022000-46030200	Weak transcription	Gastric	stomach
42	chr10:46022000-46030400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr10:46022000-46032600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:46022000-46043400	Weak transcription	Brain Angular Gyrus	brain
45	chr10:46022000-46046600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:46022200-46027000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:46022200-46027000	Weak transcription	Adipose Nuclei	Adipose
48	chr10:46022200-46028000	Weak transcription	Fetal Muscle Leg	muscle
49	chr10:46022200-46029800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:46022200-46030000	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links