Variant report

Variant	rs72798218
Chromosome Location	chr10:46075009-46075010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:46074816..46082903-chr10:46083299..46090228,15	K562	blood:

Variant related genes	Relation type
ENSG00000165406	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10900215	1.00[ASN][1000 genomes]
rs10900228	1.00[ASN][1000 genomes]
rs11239523	1.00[ASN][1000 genomes]
rs11239524	1.00[ASN][1000 genomes]
rs11239534	1.00[ASN][1000 genomes]
rs11239540	1.00[ASN][1000 genomes]
rs11239572	1.00[ASN][1000 genomes]
rs12355888	1.00[ASN][1000 genomes]
rs28395868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28586924	1.00[ASN][1000 genomes]
rs56071381	1.00[ASN][1000 genomes]
rs61854113	1.00[ASN][1000 genomes]
rs61854124	1.00[ASN][1000 genomes]
rs72796464	1.00[ASN][1000 genomes]
rs72796496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72798212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1041417	chr10:46021181-46088061	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv528750	chr10:46024620-46076235	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1052233	chr10:46024620-46088061	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1047117	chr10:46027942-46075946	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv2761592	chr10:46072872-46090202	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv442178	chr10:46072875-46076231	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46047000-46076400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:46054200-46075600	Weak transcription	Primary T cells from cord blood	blood
3	chr10:46054200-46075800	Weak transcription	Right Atrium	heart
4	chr10:46056200-46075200	Weak transcription	Thymus	Thymus
5	chr10:46058200-46076200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:46064400-46075200	Weak transcription	Fetal Thymus	thymus
7	chr10:46070200-46075400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:46071200-46075800	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:46071600-46075600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:46071600-46075800	Weak transcription	Fetal Intestine Large	intestine
11	chr10:46071600-46076200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:46071800-46075800	Weak transcription	Stomach Mucosa	stomach
13	chr10:46071800-46076200	Weak transcription	Brain Substantia Nigra	brain
14	chr10:46071800-46076400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:46071800-46076400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:46072000-46076200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:46072000-46076400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:46072200-46076200	Weak transcription	Psoas Muscle	Psoas
19	chr10:46072400-46075800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:46072400-46075800	Weak transcription	Left Ventricle	heart
21	chr10:46072600-46075800	Weak transcription	Fetal Intestine Small	intestine
22	chr10:46072600-46076200	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:46072600-46086600	Weak transcription	Small Intestine	intestine
24	chr10:46073200-46075400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr10:46073400-46075200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:46073400-46075400	Enhancers	HepG2	liver
27	chr10:46073600-46075200	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr10:46073600-46075400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr10:46073600-46075600	Enhancers	Primary hematopoietic stem cells	blood
30	chr10:46073600-46075600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:46073600-46075600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:46073600-46075600	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr10:46073600-46075600	Enhancers	K562	blood
34	chr10:46073800-46075400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:46073800-46075600	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr10:46073800-46075800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:46074000-46075400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr10:46074000-46075600	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr10:46074200-46075800	Weak transcription	Adipose Nuclei	Adipose
40	chr10:46074400-46075400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:46074400-46075600	Weak transcription	Dnd41	blood
42	chr10:46074600-46075400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:46074600-46075800	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr10:46074600-46075800	Weak transcription	Liver	Liver
45	chr10:46074600-46075800	Weak transcription	Brain Anterior Caudate	brain
46	chr10:46074800-46075400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr10:46075000-46075400	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr10:46075000-46075600	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr10:46075000-46075600	Enhancers	Primary B cells from cord blood	blood
50	chr10:46075000-46075600	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links