Variant report

Variant	rs72796496
Chromosome Location	chr10:45966526-45966527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45964661..45966723-chr10:46088628..46091484,2	K562	blood:
2	chr10:45966219..45968342-chr10:45984924..45988561,3	K562	blood:
3	chr10:45965669..45968296-chr10:45969406..45974419,5	K562	blood:
4	chr10:45960989..45962964-chr10:45966369..45968262,2	K562	blood:

Variant related genes	Relation type
ENSG00000165406	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10900215	1.00[ASN][1000 genomes]
rs10900228	1.00[ASN][1000 genomes]
rs11239523	1.00[ASN][1000 genomes]
rs11239524	1.00[ASN][1000 genomes]
rs11239534	1.00[ASN][1000 genomes]
rs11239540	1.00[ASN][1000 genomes]
rs11239572	1.00[ASN][1000 genomes]
rs12355888	1.00[ASN][1000 genomes]
rs28395868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28586924	1.00[ASN][1000 genomes]
rs56071381	1.00[ASN][1000 genomes]
rs61854113	1.00[ASN][1000 genomes]
rs61854124	1.00[ASN][1000 genomes]
rs72796464	1.00[ASN][1000 genomes]
rs72798212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72798220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45938600-45967200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:45938600-45967200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:45950000-45967200	Weak transcription	Psoas Muscle	Psoas
4	chr10:45953600-45969200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:45956400-45966800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:45959000-45967200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:45959800-45967200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:45960200-45970000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:45960400-45968600	Enhancers	Primary hematopoietic stem cells	blood
10	chr10:45960400-45971000	Enhancers	Brain Cingulate Gyrus	brain
11	chr10:45961000-45967200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr10:45963000-45967200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:45964200-45966800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:45964200-45967200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:45964400-45968000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:45964800-45966800	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr10:45964800-45971200	Weak transcription	Fetal Brain Male	brain
18	chr10:45965200-45966600	Enhancers	Primary B cells from cord blood	blood
19	chr10:45965200-45966800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr10:45965200-45970800	Enhancers	Brain Substantia Nigra	brain
21	chr10:45965400-45966600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:45965400-45966800	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr10:45965400-45966800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr10:45965400-45966800	Enhancers	Fetal Thymus	thymus
25	chr10:45965400-45967000	Enhancers	Primary T cells fromperipheralblood	blood
26	chr10:45965400-45967000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:45965400-45967200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:45965400-45967400	Flanking Active TSS	K562	blood
29	chr10:45965400-45967600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:45965400-45967600	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr10:45965400-45967600	Enhancers	Fetal Muscle Leg	muscle
32	chr10:45965400-45967800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:45965400-45967800	Enhancers	HUVEC	blood vessel
34	chr10:45965400-45969200	Enhancers	Brain Anterior Caudate	brain
35	chr10:45965400-45970400	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr10:45965600-45966600	Enhancers	Fetal Heart	heart
37	chr10:45965600-45966600	Enhancers	Right Atrium	heart
38	chr10:45965600-45966600	Flanking Active TSS	HepG2	liver
39	chr10:45965600-45966800	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr10:45965600-45966800	Enhancers	Osteobl	bone
41	chr10:45965600-45967000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:45965600-45967400	Enhancers	Duodenum Mucosa	Duodenum
43	chr10:45965600-45967400	Enhancers	Fetal Lung	lung
44	chr10:45965600-45967600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:45965600-45967600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:45965600-45967600	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:45965600-45967800	Enhancers	Adipose Nuclei	Adipose
48	chr10:45965600-45967800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:45965600-45967800	Enhancers	Rectal Smooth Muscle	rectum
50	chr10:45965600-45967800	Enhancers	Stomach Smooth Muscle	stomach

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