Variant report

Variant	rs72813852
Chromosome Location	chr5:114626578-114626579
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:114626523-114626707	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:114626278..114629451-chr5:114630853..114633217,3	K562	blood:
2	chr5:114623240..114626730-chr5:114627807..114632536,6	MCF-7	breast:
3	chr5:114626278..114630090-chr5:114630456..114633226,5	K562	blood:
4	chr5:114619634..114629040-chr5:114629951..114633566,14	MCF-7	breast:
5	chr5:114598335..114600352-chr5:114624872..114627572,2	K562	blood:

No data

Variant related genes	Relation type
HMGN1P15	TF binding region
ENSG00000164221	Chromatin interaction
ENSG00000164219	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs3805579	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56385991	0.86[AFR][1000 genomes]
rs56400472	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66611625	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66995219	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67430998	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68086593	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813815	1.00[ASN][1000 genomes]
rs72813817	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813822	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813826	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813828	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813830	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813833	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813836	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813838	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813839	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813840	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72813842	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72813844	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813845	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813846	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813849	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813858	0.86[AFR][1000 genomes]
rs72815919	0.81[AFR][1000 genomes]
rs72815924	0.81[AFR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114599000-114626600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:114599000-114630800	Weak transcription	Psoas Muscle	Psoas
3	chr5:114599000-114631200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:114599000-114631200	Weak transcription	HSMM	muscle
5	chr5:114599000-114631400	Weak transcription	Left Ventricle	heart
6	chr5:114599200-114631200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:114601200-114631200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:114601200-114631400	Weak transcription	Aorta	Aorta
9	chr5:114604000-114630600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:114611200-114630400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:114611200-114630400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr5:114611200-114630800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr5:114611400-114627600	Weak transcription	Primary B cells from cord blood	blood
14	chr5:114611400-114628600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr5:114612800-114630200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:114621400-114628600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:114621600-114628400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:114621600-114630400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:114622400-114630200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:114625200-114627800	Weak transcription	Fetal Brain Male	brain
21	chr5:114625200-114628200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr5:114625400-114630600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr5:114625400-114630800	Weak transcription	Monocytes-CD14+_RO01746	blood

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