Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:114619634..114629040-chr5:114629951..114633566,14	MCF-7	breast:
2	chr5:114630838..114633826-chr5:114960976..114962823,3	MCF-7	breast:
3	chr5:114596880..114599090-chr5:114631128..114633570,2	MCF-7	breast:
4	chr5:114596551..114598881-chr5:114630526..114633575,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2605174	0.82[EUR][1000 genomes]
rs267284	0.82[EUR][1000 genomes]
rs3805579	0.83[AFR][1000 genomes]
rs59371856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72813826	0.83[AFR][1000 genomes]
rs72813828	0.83[AFR][1000 genomes]
rs72813830	0.83[AFR][1000 genomes]
rs72813836	0.83[AFR][1000 genomes]
rs72813838	0.83[AFR][1000 genomes]
rs72813840	0.83[AFR][1000 genomes]
rs72813844	0.91[AFR][1000 genomes]
rs72813845	0.91[AFR][1000 genomes]
rs72813846	0.91[AFR][1000 genomes]
rs72813849	0.89[AFR][1000 genomes]
rs72813852	0.86[AFR][1000 genomes]
rs72813858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815919	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815924	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815926	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815929	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3409295	chr5:114631078-114633926	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114632200-114641800	Weak transcription	Stomach Mucosa	stomach
2	chr5:114632400-114634600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr5:114632400-114634600	Weak transcription	Spleen	Spleen
4	chr5:114632800-114634400	Weak transcription	Psoas Muscle	Psoas
5	chr5:114632800-114634400	Weak transcription	K562	blood
6	chr5:114633200-114634200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:114633200-114634800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:114633400-114633600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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