Variant report

Variant	rs2605174
Chromosome Location	chr5:114645994-114645995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1455852	0.81[ASN][1000 genomes]
rs1455853	0.81[ASN][1000 genomes]
rs17137632	0.87[AMR][1000 genomes]
rs183842	0.88[ASN][1000 genomes]
rs2605182	0.88[ASN][1000 genomes]
rs267284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267285	0.88[ASN][1000 genomes]
rs267289	0.81[ASN][1000 genomes]
rs2925173	0.81[ASN][1000 genomes]
rs2925174	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56385991	0.82[EUR][1000 genomes]
rs59371856	0.82[EUR][1000 genomes]
rs72813858	0.82[EUR][1000 genomes]
rs72815919	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72815924	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72815926	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72815929	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72815932	0.81[AMR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114642200-114651200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:114642200-114651400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:114642400-114647400	Weak transcription	Brain Germinal Matrix	brain
4	chr5:114645600-114646200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:114645600-114648000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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