Variant report

Variant	rs72815926
Chromosome Location	chr5:114645509-114645510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17137632	1.00[AMR][1000 genomes]
rs2605174	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs267284	1.00[EUR][1000 genomes]
rs2925174	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56385991	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371856	0.82[EUR][1000 genomes]
rs72813844	0.80[AFR][1000 genomes]
rs72813845	0.80[AFR][1000 genomes]
rs72813846	0.80[AFR][1000 genomes]
rs72813858	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815919	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815924	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815929	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815932	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980960	chr5:114640484-114645980	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114642200-114651200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:114642200-114651400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:114642400-114647400	Weak transcription	Brain Germinal Matrix	brain
4	chr5:114645200-114645600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:114645400-114645600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:114645400-114645600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links