Variant report

Variant	rs267284
Chromosome Location	chr5:114642221-114642222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1455852	0.81[ASN][1000 genomes]
rs1455853	0.81[ASN][1000 genomes]
rs183842	0.88[ASN][1000 genomes]
rs2605174	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2605182	0.88[ASN][1000 genomes]
rs267285	0.88[ASN][1000 genomes]
rs267289	0.81[ASN][1000 genomes]
rs2925173	0.81[ASN][1000 genomes]
rs2925174	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56385991	0.82[EUR][1000 genomes]
rs59371856	0.82[EUR][1000 genomes]
rs72813858	0.82[EUR][1000 genomes]
rs72815919	1.00[EUR][1000 genomes]
rs72815924	1.00[EUR][1000 genomes]
rs72815926	1.00[EUR][1000 genomes]
rs72815929	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980960	chr5:114640484-114645980	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114641600-114642400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr5:114641800-114642400	Enhancers	Brain Germinal Matrix	brain
3	chr5:114641800-114642600	Enhancers	Duodenum Mucosa	Duodenum
4	chr5:114642000-114642400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
5	chr5:114642200-114651200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:114642200-114651400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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