Variant report

Variant	rs267289
Chromosome Location	chr5:114647668-114647669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10079729	1.00[CHB][hapmap]
rs1455852	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1455853	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs183842	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2605174	0.81[ASN][1000 genomes]
rs2605182	1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs267284	0.81[ASN][1000 genomes]
rs267285	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs267291	1.00[YRI][hapmap]
rs267293	1.00[YRI][hapmap]
rs267296	1.00[YRI][hapmap]
rs2925173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2925174	0.88[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114642200-114651200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:114642200-114651400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:114645600-114648000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:114646400-114648200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:114647400-114647800	Enhancers	Brain Germinal Matrix	brain
6	chr5:114647600-114648600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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