Variant report

Variant	rs59371856
Chromosome Location	chr5:114633881-114633882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2605174	0.82[EUR][1000 genomes]
rs267284	0.82[EUR][1000 genomes]
rs56385991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72813858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72815919	0.82[EUR][1000 genomes]
rs72815924	0.82[EUR][1000 genomes]
rs72815926	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3409295	chr5:114631078-114633926	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114632200-114641800	Weak transcription	Stomach Mucosa	stomach
2	chr5:114632400-114634600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr5:114632400-114634600	Weak transcription	Spleen	Spleen
4	chr5:114632800-114634400	Weak transcription	Psoas Muscle	Psoas
5	chr5:114632800-114634400	Weak transcription	K562	blood
6	chr5:114633200-114634200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:114633200-114634800	Weak transcription	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links