Variant report

Variant	rs72813844
Chromosome Location	chr5:114616716-114616717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:114616553..114619360-chr5:114629517..114632086,3	MCF-7	breast:
2	chr5:114607630..114609862-chr5:114615334..114618265,2	MCF-7	breast:
3	chr5:114614199..114617138-chr5:114617359..114621851,4	K562	blood:
4	chr5:114615132..114617908-chr5:114626623..114628858,2	K562	blood:

Variant related genes	Relation type
ENSG00000164221	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs3805579	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56385991	0.91[AFR][1000 genomes]
rs56400472	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66611625	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66995219	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67430998	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68086593	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813815	1.00[ASN][1000 genomes]
rs72813817	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813822	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813826	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813828	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813830	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813833	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813836	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813838	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813839	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813840	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72813842	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72813845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813849	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813852	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813858	0.91[AFR][1000 genomes]
rs72815919	0.86[AFR][1000 genomes]
rs72815924	0.86[AFR][1000 genomes]
rs72815926	0.80[AFR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114599000-114617000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:114599000-114617200	Weak transcription	Thymus	Thymus
3	chr5:114599000-114624000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:114599000-114626600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:114599000-114630800	Weak transcription	Psoas Muscle	Psoas
6	chr5:114599000-114631200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:114599000-114631200	Weak transcription	HSMM	muscle
8	chr5:114599000-114631400	Weak transcription	Left Ventricle	heart
9	chr5:114599200-114622000	Weak transcription	Colon Smooth Muscle	Colon
10	chr5:114599200-114631200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:114599400-114621800	Weak transcription	Brain Angular Gyrus	brain
12	chr5:114601200-114631200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:114601200-114631400	Weak transcription	Aorta	Aorta
14	chr5:114602800-114621800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:114604000-114622400	Weak transcription	NHDF-Ad	bronchial
16	chr5:114604000-114630600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:114609800-114617600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr5:114610000-114621400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:114610400-114621400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:114610800-114621800	Weak transcription	Brain Hippocampus Middle	brain
21	chr5:114611000-114617800	Weak transcription	Brain Substantia Nigra	brain
22	chr5:114611200-114617400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr5:114611200-114618400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:114611200-114618600	Weak transcription	Brain Germinal Matrix	brain
25	chr5:114611200-114619000	Weak transcription	HSMMtube	muscle
26	chr5:114611200-114621800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:114611200-114622000	Weak transcription	Adipose Nuclei	Adipose
28	chr5:114611200-114622000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr5:114611200-114630400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:114611200-114630400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr5:114611200-114630800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr5:114611400-114618800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr5:114611400-114621200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr5:114611400-114624200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr5:114611400-114627600	Weak transcription	Primary B cells from cord blood	blood
36	chr5:114611400-114628600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr5:114611600-114619800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr5:114611600-114622200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr5:114611600-114623200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr5:114612400-114621600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr5:114612400-114625000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr5:114612600-114619000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:114612800-114621200	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr5:114612800-114622400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr5:114612800-114630200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr5:114615800-114621400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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