Variant report

Variant	rs72819856
Chromosome Location	chr10:98683218-98683219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98676150..98678245-chr10:98682873..98684599,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17112250	1.00[AFR][1000 genomes]
rs57437078	1.00[AFR][1000 genomes]
rs57625543	1.00[AFR][1000 genomes]
rs72819857	1.00[AFR][1000 genomes]
rs72819858	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
2	chr10:98624800-98696000	Weak transcription	K562	blood
3	chr10:98636800-98683400	Weak transcription	Osteobl	bone
4	chr10:98637400-98708800	Weak transcription	NH-A	brain
5	chr10:98639800-98714600	Weak transcription	Esophagus	oesophagus
6	chr10:98640600-98714600	Weak transcription	Hela-S3	cervix
7	chr10:98650200-98708800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:98653400-98714200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:98657400-98705800	Weak transcription	NHDF-Ad	bronchial
10	chr10:98659000-98714600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:98662800-98687600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:98663000-98688000	Weak transcription	Adipose Nuclei	Adipose
13	chr10:98663000-98695000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr10:98663000-98720400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr10:98663400-98691200	Weak transcription	Small Intestine	intestine
16	chr10:98663600-98689400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:98663600-98714800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:98664400-98696400	Weak transcription	NHLF	lung
19	chr10:98664800-98714000	Weak transcription	Colonic Mucosa	Colon
20	chr10:98665000-98714800	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:98666000-98686000	Weak transcription	NHEK	skin
22	chr10:98666000-98714600	Weak transcription	Fetal Brain Female	brain
23	chr10:98666800-98687800	Weak transcription	HUVEC	blood vessel
24	chr10:98667000-98685800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:98667000-98688200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:98667200-98683800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:98667200-98708800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:98668800-98698800	Weak transcription	Fetal Kidney	kidney
29	chr10:98669200-98689600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr10:98669400-98698600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr10:98669400-98714400	Weak transcription	HMEC	breast
32	chr10:98669600-98685600	Weak transcription	Brain Angular Gyrus	brain
33	chr10:98670400-98707800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:98671000-98684800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr10:98671200-98714600	Weak transcription	Ovary	ovary
36	chr10:98671200-98719800	Weak transcription	Fetal Brain Male	brain
37	chr10:98671400-98708200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:98671600-98685800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:98672200-98685800	Weak transcription	A549	lung
40	chr10:98672400-98714600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:98674200-98683800	Weak transcription	Psoas Muscle	Psoas
42	chr10:98674800-98684400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:98674800-98696800	Weak transcription	Brain Germinal Matrix	brain
44	chr10:98675200-98683800	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:98675200-98708600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr10:98675600-98687600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:98675600-98687800	Weak transcription	Liver	Liver
48	chr10:98675600-98714600	Weak transcription	Fetal Thymus	thymus
49	chr10:98675800-98684200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:98675800-98687600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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