Variant report

Variant	rs57437078
Chromosome Location	chr10:98746169-98746170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98741127..98743717-chr10:98745929..98748788,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11814029	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815437	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819015	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17112206	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17112208	0.98[EUR][1000 genomes]
rs17112234	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17112250	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2183447	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28523867	0.81[ASN][1000 genomes]
rs3829856	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4606419	0.98[ASN][1000 genomes]
rs57625543	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57868471	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58550844	0.89[EUR][1000 genomes]
rs72819843	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72819851	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72819853	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72819856	1.00[AFR][1000 genomes]
rs72819857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72819858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7911787	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831951	chr10:98717103-98761280	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98734000-98748400	Weak transcription	Stomach Mucosa	stomach
2	chr10:98734600-98746800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr10:98741200-98747800	Weak transcription	Psoas Muscle	Psoas
4	chr10:98741200-98758000	Weak transcription	K562	blood
5	chr10:98741600-98747600	Weak transcription	Ovary	ovary
6	chr10:98741600-98750600	Weak transcription	NHEK	skin
7	chr10:98741600-98751400	Weak transcription	Small Intestine	intestine
8	chr10:98741800-98748000	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:98742000-98748000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:98742000-98757000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr10:98742200-98747400	Weak transcription	NHLF	lung
12	chr10:98742200-98747800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:98742200-98748200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:98742200-98748200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:98742200-98750800	Weak transcription	HMEC	breast
16	chr10:98742200-98752200	Weak transcription	Colonic Mucosa	Colon
17	chr10:98742200-98754600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:98742200-98754600	Weak transcription	Right Ventricle	heart
19	chr10:98742200-98754800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:98742200-98755000	Weak transcription	Left Ventricle	heart
21	chr10:98742400-98747400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:98742400-98747400	Weak transcription	Osteobl	bone
23	chr10:98742400-98747600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:98742400-98747800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:98742400-98748000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr10:98742400-98748000	Weak transcription	Fetal Kidney	kidney
27	chr10:98742400-98750200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:98742400-98750200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:98742400-98751200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:98742400-98751400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:98742400-98752400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:98742600-98748200	Weak transcription	Aorta	Aorta
33	chr10:98742600-98748400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:98742600-98750800	Weak transcription	A549	lung
35	chr10:98742600-98752600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:98742600-98752800	Weak transcription	Gastric	stomach
37	chr10:98742600-98755800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr10:98742600-98756000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:98742600-98756800	Weak transcription	Lung	lung
40	chr10:98742800-98747000	Weak transcription	HSMMtube	muscle
41	chr10:98742800-98747600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:98742800-98747600	Weak transcription	Placenta	Placenta
43	chr10:98743000-98748000	Weak transcription	Fetal Lung	lung
44	chr10:98743000-98758600	Weak transcription	Spleen	Spleen
45	chr10:98743200-98749200	Weak transcription	HepG2	liver
46	chr10:98743400-98747800	Weak transcription	NH-A	brain
47	chr10:98743600-98747000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:98743600-98747400	Weak transcription	HSMM	muscle
49	chr10:98743600-98750400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:98743600-98750400	Weak transcription	Fetal Intestine Large	intestine

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