Variant report

Variant	rs11819015
Chromosome Location	chr10:98758953-98758954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98755934..98759369-chr10:98763057..98767481,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11814029	0.98[EUR][1000 genomes]
rs11815437	0.98[EUR][1000 genomes]
rs17112206	0.94[EUR][1000 genomes]
rs17112208	0.96[EUR][1000 genomes]
rs17112234	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17112250	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2183447	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3829856	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4606419	0.95[ASN][1000 genomes]
rs57437078	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57625543	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57868471	0.98[EUR][1000 genomes]
rs58550844	0.87[EUR][1000 genomes]
rs72819843	0.98[EUR][1000 genomes]
rs72819851	0.98[EUR][1000 genomes]
rs72819853	0.98[EUR][1000 genomes]
rs72819857	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72819858	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7911787	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831951	chr10:98717103-98761280	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98745200-98760400	Weak transcription	Primary T cells from cord blood	blood
2	chr10:98751600-98760200	Weak transcription	A549	lung
3	chr10:98753000-98759800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:98753000-98760000	Weak transcription	Gastric	stomach
5	chr10:98753000-98762400	Weak transcription	Thymus	Thymus
6	chr10:98753000-98765200	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:98755600-98759600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:98756200-98780000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:98756400-98764600	Weak transcription	Brain Angular Gyrus	brain
10	chr10:98756600-98760400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:98757200-98767400	Strong transcription	Fetal Thymus	thymus
12	chr10:98757400-98759000	Enhancers	Duodenum Mucosa	Duodenum
13	chr10:98757600-98761000	Enhancers	Liver	Liver
14	chr10:98757600-98761200	Enhancers	Fetal Intestine Small	intestine
15	chr10:98757600-98761400	Enhancers	Fetal Intestine Large	intestine
16	chr10:98757600-98766600	Strong transcription	Brain Germinal Matrix	brain
17	chr10:98758000-98759000	Flanking Active TSS	HepG2	liver
18	chr10:98758000-98759000	Enhancers	NH-A	brain
19	chr10:98758000-98766200	Strong transcription	Fetal Brain Female	brain
20	chr10:98758200-98759000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:98758200-98759000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:98758200-98761400	Enhancers	Placenta	Placenta
23	chr10:98758200-98765800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:98758400-98759000	Enhancers	Fetal Muscle Trunk	muscle
25	chr10:98758600-98759000	Enhancers	Spleen	Spleen
26	chr10:98758800-98759000	Enhancers	Lung	lung
27	chr10:98758800-98759200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:98758800-98760200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:98758800-98760200	Weak transcription	Osteobl	bone

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