Variant report

Variant	rs7911787
Chromosome Location	chr10:98619568-98619569
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98615796..98618493-chr10:98618946..98621745,3	MCF-7	breast:
2	chr10:98601468..98603302-chr10:98616788..98619588,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11814029	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11815437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11819015	0.87[EUR][1000 genomes]
rs12571254	0.82[CEU][hapmap]
rs17112206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17112208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17112234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17112250	0.91[EUR][1000 genomes]
rs17112311	0.82[CEU][hapmap]
rs2183447	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3829856	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs57437078	0.89[EUR][1000 genomes]
rs57625543	0.89[EUR][1000 genomes]
rs57868471	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58550844	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819843	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72819851	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72819853	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72819857	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72819858	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7895214	0.92[CHB][hapmap];0.95[CHD][hapmap];0.91[ASN][1000 genomes]
rs7899594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7922565	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98593800-98624200	Weak transcription	Colonic Mucosa	Colon
2	chr10:98594200-98639400	Weak transcription	Thymus	Thymus
3	chr10:98600200-98624000	Weak transcription	Fetal Brain Male	brain
4	chr10:98602200-98621200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:98603200-98619600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:98603200-98620000	Weak transcription	Hela-S3	cervix
7	chr10:98603200-98621400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:98604600-98623400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:98604800-98623600	Weak transcription	Fetal Brain Female	brain
10	chr10:98605200-98619600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:98606200-98623200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:98606800-98623600	Weak transcription	Stomach Mucosa	stomach
13	chr10:98607000-98624000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:98610600-98622000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:98610800-98632200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:98611000-98620000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:98611000-98621600	Weak transcription	Placenta	Placenta
18	chr10:98611000-98623200	Weak transcription	A549	lung
19	chr10:98611000-98649800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
21	chr10:98611200-98623400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:98611200-98623600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:98611200-98623600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr10:98611200-98640200	Weak transcription	Fetal Heart	heart
25	chr10:98611400-98620000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:98611600-98619600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:98612200-98623400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:98613800-98619600	Weak transcription	Esophagus	oesophagus
29	chr10:98614000-98623400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:98616200-98620400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr10:98616200-98621400	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:98616400-98619600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:98616400-98619600	Weak transcription	HepG2	liver
34	chr10:98616400-98619800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr10:98616400-98621600	Weak transcription	Gastric	stomach
36	chr10:98616400-98622200	Weak transcription	Lung	lung
37	chr10:98616400-98624200	Weak transcription	Ovary	ovary
38	chr10:98616600-98621200	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:98616600-98621600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr10:98616600-98622400	Weak transcription	HUVEC	blood vessel
41	chr10:98616600-98629600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:98617200-98651600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr10:98617600-98620000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr10:98617600-98622600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr10:98617600-98623600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr10:98617600-98624000	Weak transcription	Adipose Nuclei	Adipose
47	chr10:98617600-98624400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:98617600-98631600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr10:98617800-98620600	Strong transcription	Primary B cells from cord blood	blood
50	chr10:98617800-98621600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links