Variant report

Variant	rs7899594
Chromosome Location	chr10:98596282-98596283
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98593714..98596338-chr10:98621792..98624067,2	K562	blood:
2	chr10:98592318..98594800-chr10:98594886..98599322,5	MCF-7	breast:
3	chr10:98595510..98597192-chr10:98598664..98600998,2	MCF-7	breast:
4	chr10:98594492..98596521-chr10:98602633..98604736,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196233	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11814029	0.84[ASN][1000 genomes]
rs11815437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12571254	0.82[CEU][hapmap]
rs17112206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17112208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17112234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17112311	0.82[CEU][hapmap]
rs2183447	0.82[ASN][1000 genomes]
rs3829856	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs57868471	0.89[ASN][1000 genomes]
rs58550844	0.98[ASN][1000 genomes]
rs72819843	0.89[ASN][1000 genomes]
rs72819851	0.83[ASN][1000 genomes]
rs72819853	0.83[ASN][1000 genomes]
rs72819857	0.81[ASN][1000 genomes]
rs72819858	0.82[ASN][1000 genomes]
rs7895214	0.92[CHB][hapmap];0.93[ASN][1000 genomes]
rs7911787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7922565	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv825532	chr10:98567434-98618034	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98593600-98596800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr10:98593800-98596400	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:98593800-98596600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:98593800-98596600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr10:98593800-98596800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:98593800-98597000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:98593800-98599600	Weak transcription	Lung	lung
8	chr10:98593800-98600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:98593800-98600600	Weak transcription	Esophagus	oesophagus
10	chr10:98593800-98601800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:98593800-98602800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:98593800-98606800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:98593800-98624200	Weak transcription	Colonic Mucosa	Colon
14	chr10:98594000-98596400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:98594000-98596400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr10:98594000-98597800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:98594000-98604200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:98594200-98596600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr10:98594200-98596600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:98594200-98596600	Enhancers	Hela-S3	cervix
21	chr10:98594200-98599200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:98594200-98600600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:98594200-98610200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:98594200-98610800	Weak transcription	Fetal Thymus	thymus
25	chr10:98594200-98639400	Weak transcription	Thymus	Thymus
26	chr10:98594400-98596400	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr10:98594400-98596600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:98594400-98596600	Enhancers	Brain Cingulate Gyrus	brain
29	chr10:98594400-98596600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr10:98594400-98596600	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr10:98594400-98596600	Enhancers	A549	lung
32	chr10:98594400-98596600	Enhancers	Osteobl	bone
33	chr10:98594400-98596800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr10:98594400-98596800	Enhancers	Liver	Liver
35	chr10:98594400-98596800	Enhancers	Brain Hippocampus Middle	brain
36	chr10:98594400-98599600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:98594400-98618800	Weak transcription	Fetal Stomach	stomach
38	chr10:98594600-98596400	Enhancers	Primary B cells from cord blood	blood
39	chr10:98594600-98596800	Enhancers	Fetal Intestine Large	intestine
40	chr10:98594800-98596400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:98594800-98596400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:98594800-98596600	Enhancers	Fetal Intestine Small	intestine
43	chr10:98594800-98599400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr10:98594800-98600400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr10:98595000-98596600	Enhancers	Brain Anterior Caudate	brain
46	chr10:98595000-98597600	Enhancers	Fetal Heart	heart
47	chr10:98595200-98596400	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr10:98595200-98596400	Enhancers	HUVEC	blood vessel
49	chr10:98595200-98596600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:98595200-98596600	Enhancers	Duodenum Smooth Muscle	Duodenum

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