Variant report

Variant	rs7895214
Chromosome Location	chr10:98595326-98595327
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98593714..98596338-chr10:98621792..98624067,2	K562	blood:
2	chr10:98592318..98594800-chr10:98594886..98599322,5	MCF-7	breast:
3	chr10:98594492..98596521-chr10:98602633..98604736,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196233	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11815437	0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[ASN][1000 genomes]
rs17112206	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs17112208	0.92[CHB][hapmap];0.95[CHD][hapmap]
rs17112234	0.92[CHB][hapmap];0.95[CHD][hapmap]
rs3829856	0.84[CHB][hapmap];0.95[CHD][hapmap]
rs57868471	0.82[ASN][1000 genomes]
rs58550844	0.91[ASN][1000 genomes]
rs72819843	0.82[ASN][1000 genomes]
rs7899594	0.92[CHB][hapmap];0.93[ASN][1000 genomes]
rs7911787	0.92[CHB][hapmap];0.95[CHD][hapmap];0.91[ASN][1000 genomes]
rs7922565	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv825532	chr10:98567434-98618034	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7895214	CEP55	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98591400-98595600	Active TSS	GM12878-XiMat	blood
2	chr10:98593600-98595600	Active TSS	Brain Germinal Matrix	brain
3	chr10:98593600-98596800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:98593800-98595400	Weak transcription	Psoas Muscle	Psoas
5	chr10:98593800-98595600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:98593800-98595600	Weak transcription	Spleen	Spleen
7	chr10:98593800-98596200	Weak transcription	Gastric	stomach
8	chr10:98593800-98596400	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:98593800-98596600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:98593800-98596600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:98593800-98596800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr10:98593800-98597000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr10:98593800-98599600	Weak transcription	Lung	lung
14	chr10:98593800-98600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:98593800-98600600	Weak transcription	Esophagus	oesophagus
16	chr10:98593800-98601800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:98593800-98602800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:98593800-98606800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:98593800-98624200	Weak transcription	Colonic Mucosa	Colon
20	chr10:98594000-98596400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:98594000-98596400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr10:98594000-98597800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:98594000-98604200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:98594200-98595400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:98594200-98595400	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:98594200-98595400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:98594200-98595400	Weak transcription	Stomach Mucosa	stomach
28	chr10:98594200-98595600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:98594200-98595600	Weak transcription	Aorta	Aorta
30	chr10:98594200-98595600	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:98594200-98595600	Weak transcription	Placenta	Placenta
32	chr10:98594200-98595600	Weak transcription	Right Ventricle	heart
33	chr10:98594200-98595800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:98594200-98595800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:98594200-98596000	Enhancers	Rectal Smooth Muscle	rectum
36	chr10:98594200-98596200	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr10:98594200-98596600	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr10:98594200-98596600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:98594200-98596600	Enhancers	Hela-S3	cervix
40	chr10:98594200-98599200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:98594200-98600600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:98594200-98610200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:98594200-98610800	Weak transcription	Fetal Thymus	thymus
44	chr10:98594200-98639400	Weak transcription	Thymus	Thymus
45	chr10:98594400-98595400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr10:98594400-98595400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:98594400-98595400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:98594400-98595400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr10:98594400-98595400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:98594400-98595400	Weak transcription	Adipose Nuclei	Adipose

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