Variant report

Variant	rs12571254
Chromosome Location	chr10:98776678-98776679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11815437	0.82[CEU][hapmap]
rs12253289	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572723	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17112206	0.82[CEU][hapmap]
rs17112208	0.82[CEU][hapmap]
rs17112234	0.82[CEU][hapmap]
rs17112311	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35736823	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3829856	0.82[CEU][hapmap]
rs4600137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61644651	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61707312	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069617	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs72819878	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72819880	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72819886	0.82[EUR][1000 genomes]
rs72819888	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74153750	0.82[EUR][1000 genomes]
rs7899594	0.82[CEU][hapmap]
rs7911787	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98756200-98780000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:98770200-98780200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:98772400-98778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98773400-98779200	Weak transcription	Fetal Brain Female	brain
5	chr10:98774000-98777200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:98774000-98779400	Weak transcription	Fetal Intestine Small	intestine
7	chr10:98774800-98777400	Weak transcription	Brain Germinal Matrix	brain
8	chr10:98774800-98778000	Weak transcription	Thymus	Thymus
9	chr10:98775000-98777000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:98775000-98779800	Weak transcription	Fetal Intestine Large	intestine
11	chr10:98775200-98778000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:98775200-98779800	Weak transcription	Fetal Lung	lung
13	chr10:98775200-98780400	Weak transcription	Psoas Muscle	Psoas
14	chr10:98775600-98778600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:98775600-98780000	Weak transcription	Fetal Heart	heart
16	chr10:98776000-98777400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:98776000-98777600	Enhancers	Primary hematopoietic stem cells	blood
18	chr10:98776200-98777000	Flanking Active TSS	GM12878-XiMat	blood
19	chr10:98776200-98777200	Enhancers	Primary B cells from peripheral blood	blood
20	chr10:98776200-98777400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:98776200-98777400	Enhancers	Fetal Thymus	thymus
22	chr10:98776400-98777000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr10:98776400-98777200	Enhancers	Dnd41	blood
24	chr10:98776600-98777000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:98776600-98777000	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr10:98776600-98777000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr10:98776600-98777000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:98776600-98777000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr10:98776600-98777000	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr10:98776600-98777000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:98776600-98777000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:98776600-98777000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:98776600-98777000	Enhancers	HSMM	muscle
34	chr10:98776600-98777000	Enhancers	NH-A	brain
35	chr10:98776600-98777200	Enhancers	Primary T cells fromperipheralblood	blood
36	chr10:98776600-98777200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr10:98776600-98777400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr10:98776600-98777600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:98776600-98778400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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