Variant report

Variant	rs12253289
Chromosome Location	chr10:98777404-98777405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12571254	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572723	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17112311	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35736823	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4600137	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61644651	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61707312	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069617	1.00[ASN][1000 genomes]
rs72819878	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72819880	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72819886	0.83[EUR][1000 genomes]
rs72819888	0.83[EUR][1000 genomes]
rs74153750	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98756200-98780000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:98770200-98780200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:98772400-98778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98773400-98779200	Weak transcription	Fetal Brain Female	brain
5	chr10:98774000-98779400	Weak transcription	Fetal Intestine Small	intestine
6	chr10:98774800-98778000	Weak transcription	Thymus	Thymus
7	chr10:98775000-98779800	Weak transcription	Fetal Intestine Large	intestine
8	chr10:98775200-98778000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:98775200-98779800	Weak transcription	Fetal Lung	lung
10	chr10:98775200-98780400	Weak transcription	Psoas Muscle	Psoas
11	chr10:98775600-98778600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:98775600-98780000	Weak transcription	Fetal Heart	heart
13	chr10:98776000-98777600	Enhancers	Primary hematopoietic stem cells	blood
14	chr10:98776600-98777600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:98776600-98778400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:98776800-98780600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr10:98777000-98777600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr10:98777000-98777600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:98777000-98777600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:98777000-98777600	Enhancers	GM12878-XiMat	blood
21	chr10:98777000-98779000	Weak transcription	HSMMtube	muscle
22	chr10:98777000-98779200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:98777000-98779200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:98777000-98780200	Weak transcription	NH-A	brain
25	chr10:98777000-98780400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:98777200-98778000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:98777400-98777600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:98777400-98778000	Weak transcription	Fetal Thymus	thymus
29	chr10:98777400-98780200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:98777400-98780400	Strong transcription	Brain Germinal Matrix	brain
31	chr10:98777400-98781000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr10:98777400-98781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:98777400-98782000	Enhancers	Fetal Muscle Leg	muscle

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