Variant report

Variant	rs72819878
Chromosome Location	chr10:98773159-98773160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12253289	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12571254	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12572723	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17112311	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1962436	0.86[AFR][1000 genomes]
rs1962437	0.88[AFR][1000 genomes]
rs35736823	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4600137	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4917753	0.93[AFR][1000 genomes]
rs58227937	0.93[AFR][1000 genomes]
rs61644651	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61707312	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7069617	0.93[ASN][1000 genomes]
rs72819880	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7909422	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98756200-98780000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:98764800-98773200	Weak transcription	Thymus	Thymus
3	chr10:98769800-98774000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:98770200-98780200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:98770400-98774800	Strong transcription	Brain Germinal Matrix	brain
6	chr10:98770600-98775000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:98770600-98776000	Weak transcription	GM12878-XiMat	blood
8	chr10:98771600-98773400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:98772400-98778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:98773000-98773400	Strong transcription	Fetal Brain Female	brain
11	chr10:98773000-98774000	Strong transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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