Variant report

Variant	rs12572723
Chromosome Location	chr10:98782813-98782814
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98778244..98780555-chr10:98781738..98784198,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12253289	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12571254	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17112311	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35736823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4600137	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61644651	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61707312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069617	0.93[ASN][1000 genomes]
rs72819878	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72819880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72819886	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72819888	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74153750	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98777600-98791000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:98778000-98797200	Strong transcription	Fetal Thymus	thymus
3	chr10:98778800-98794400	Weak transcription	Thymus	Thymus
4	chr10:98779000-98784400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:98780400-98783000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:98780600-98785200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:98780800-98783600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:98781000-98783200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:98781000-98783200	Weak transcription	NH-A	brain
10	chr10:98781000-98783600	Weak transcription	Fetal Intestine Large	intestine
11	chr10:98781000-98783800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:98781000-98785200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:98781200-98783200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:98781200-98783200	Weak transcription	Fetal Intestine Small	intestine
15	chr10:98781200-98783400	Weak transcription	Adipose Nuclei	Adipose
16	chr10:98781200-98783400	Weak transcription	Pancreas	Pancrea
17	chr10:98781200-98783400	Weak transcription	Right Atrium	heart
18	chr10:98781200-98783600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:98781200-98783600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:98781200-98783600	Weak transcription	HSMM	muscle
21	chr10:98781200-98783800	Weak transcription	Fetal Lung	lung
22	chr10:98781200-98784000	Weak transcription	Fetal Stomach	stomach
23	chr10:98781200-98785200	Weak transcription	Aorta	Aorta
24	chr10:98781200-98785200	Weak transcription	Left Ventricle	heart
25	chr10:98781200-98785400	Weak transcription	Brain Substantia Nigra	brain
26	chr10:98781200-98785800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr10:98781200-98788400	Weak transcription	Brain Germinal Matrix	brain
28	chr10:98781200-98789600	Weak transcription	Brain Anterior Caudate	brain
29	chr10:98781200-98790400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:98781200-98790600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:98781200-98791800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:98781200-98792800	Weak transcription	Fetal Brain Male	brain
33	chr10:98781200-98794200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:98781200-98797000	Weak transcription	Gastric	stomach
35	chr10:98781400-98783200	Weak transcription	Fetal Heart	heart
36	chr10:98781400-98783600	Weak transcription	Colon Smooth Muscle	Colon
37	chr10:98781400-98783600	Weak transcription	Ovary	ovary
38	chr10:98781600-98783400	Weak transcription	NHLF	lung
39	chr10:98781800-98783200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:98781800-98783600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:98782000-98783000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:98782000-98783000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr10:98782000-98783200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:98782000-98783200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr10:98782000-98783200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:98782000-98783200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:98782000-98783200	Weak transcription	Osteobl	bone
48	chr10:98782000-98783600	Weak transcription	HSMMtube	muscle
49	chr10:98782000-98783800	Weak transcription	Fetal Muscle Leg	muscle
50	chr10:98782000-98785200	Weak transcription	Brain Angular Gyrus	brain

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