Variant report

Variant	rs72819857
Chromosome Location	chr10:98688443-98688444
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98686080..98689186-chr10:98689456..98691604,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11814029	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11815437	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11819015	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17112206	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17112208	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17112234	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17112250	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2183447	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28523867	0.86[ASN][1000 genomes]
rs3829856	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4606419	0.85[ASN][1000 genomes]
rs57437078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57625543	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57868471	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58550844	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72819843	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72819851	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72819853	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72819856	1.00[AFR][1000 genomes]
rs72819858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7899594	0.81[ASN][1000 genomes]
rs7911787	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7922565	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
2	chr10:98624800-98696000	Weak transcription	K562	blood
3	chr10:98637400-98708800	Weak transcription	NH-A	brain
4	chr10:98639800-98714600	Weak transcription	Esophagus	oesophagus
5	chr10:98640600-98714600	Weak transcription	Hela-S3	cervix
6	chr10:98650200-98708800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:98653400-98714200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:98657400-98705800	Weak transcription	NHDF-Ad	bronchial
9	chr10:98659000-98714600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:98663000-98695000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:98663000-98720400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:98663400-98691200	Weak transcription	Small Intestine	intestine
13	chr10:98663600-98689400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr10:98663600-98714800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:98664400-98696400	Weak transcription	NHLF	lung
16	chr10:98664800-98714000	Weak transcription	Colonic Mucosa	Colon
17	chr10:98665000-98714800	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:98666000-98714600	Weak transcription	Fetal Brain Female	brain
19	chr10:98667200-98708800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:98668800-98698800	Weak transcription	Fetal Kidney	kidney
21	chr10:98669200-98689600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:98669400-98698600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:98669400-98714400	Weak transcription	HMEC	breast
24	chr10:98670400-98707800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:98671200-98714600	Weak transcription	Ovary	ovary
26	chr10:98671200-98719800	Weak transcription	Fetal Brain Male	brain
27	chr10:98671400-98708200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:98672400-98714600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:98674800-98696800	Weak transcription	Brain Germinal Matrix	brain
30	chr10:98675200-98708600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:98675600-98714600	Weak transcription	Fetal Thymus	thymus
32	chr10:98675800-98688600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr10:98675800-98688800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:98675800-98688800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:98675800-98689800	Weak transcription	Pancreas	Pancrea
36	chr10:98675800-98694800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:98675800-98703800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:98675800-98708200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:98675800-98708800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr10:98675800-98714600	Weak transcription	Lung	lung
41	chr10:98675800-98714600	Weak transcription	Spleen	Spleen
42	chr10:98675800-98714800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr10:98676200-98695400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr10:98676200-98696800	Weak transcription	Thymus	Thymus
45	chr10:98677600-98705000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr10:98677800-98711800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:98678600-98689400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr10:98678600-98689800	Weak transcription	Gastric	stomach
49	chr10:98678800-98696800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:98679600-98688800	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links