Variant report

Variant	rs7282314
Chromosome Location	chr21:17099689-17099690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:17099652..17105374-chr21:17196149..17200245,6	MCF-7	breast:
2	chr21:17097568..17099854-chr21:17101138..17103471,3	K562	blood:
3	chr21:17097568..17099854-chr21:17100603..17103471,4	K562	blood:

Variant related genes	Relation type
ENSG00000155313	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10482875	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10482876	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1543299	0.95[EUR][1000 genomes]
rs17241395	0.91[ASN][1000 genomes]
rs17241409	0.89[EUR][1000 genomes]
rs17241416	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17241423	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17241430	0.89[EUR][1000 genomes]
rs17241444	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17307120	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17307170	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17307190	0.82[AMR][1000 genomes]
rs2205588	0.82[AMR][1000 genomes]
rs2242676	0.89[EUR][1000 genomes]
rs2242680	0.82[AMR][1000 genomes]
rs2242681	0.82[AMR][1000 genomes]
rs2404000	0.83[ASN][1000 genomes]
rs2823457	0.86[ASN][1000 genomes]
rs2823462	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2823463	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823471	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2823478	0.89[EUR][1000 genomes]
rs2823481	0.87[ASN][1000 genomes]
rs2823483	0.87[ASN][1000 genomes]
rs2823484	0.87[ASN][1000 genomes]
rs2823491	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2823498	0.81[ASN][1000 genomes]
rs28627435	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3787577	0.82[AMR][1000 genomes]
rs4580465	0.85[ASN][1000 genomes]
rs55806628	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56299770	0.94[EUR][1000 genomes]
rs56333224	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56410772	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56666611	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57733106	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57737796	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59084861	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59420372	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60191002	0.94[EUR][1000 genomes]
rs60360638	0.83[EUR][1000 genomes]
rs60529604	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7277807	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7278428	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7283764	0.94[EUR][1000 genomes]
rs73181987	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73355479	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73357260	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73892510	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762093	chr21:16948663-17145770	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064683	chr21:16954570-17145758	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv459099	chr21:16956866-17145011	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv587076	chr21:16956866-17145011	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1062105	chr21:16956885-17141961	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv544380	chr21:16956885-17141961	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1059500	chr21:16957752-17145758	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv2830057	chr21:16960590-17113148	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1060139	chr21:17057044-17100275	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17096800-17101800	Weak transcription	Placenta	Placenta
2	chr21:17097600-17101600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr21:17099400-17101200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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