Variant report

Variant	rs17307190
Chromosome Location	chr21:17188844-17188845
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17188442..17191179-chr21:17191582..17194063,2	MCF-7	breast:
2	chr21:17183890..17186142-chr21:17188084..17189942,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1022457	0.81[EUR][1000 genomes]
rs10482875	0.83[CEU][hapmap];0.90[AMR][1000 genomes]
rs10482876	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11910884	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs1543299	0.91[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17241409	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17241416	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17241423	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17241430	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17241444	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17241460	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17241481	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17275511	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17307120	0.83[CEU][hapmap];0.86[AMR][1000 genomes]
rs17307170	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17307176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17307197	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17307204	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2026853	1.00[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs2205585	0.94[EUR][1000 genomes]
rs2205588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2205589	0.90[EUR][1000 genomes]
rs2223176	0.94[EUR][1000 genomes]
rs2242676	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2242677	0.84[ASN][1000 genomes]
rs2242680	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2242681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2245574	0.91[CEU][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes]
rs2404000	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2404001	0.83[CEU][hapmap]
rs2823455	0.91[CEU][hapmap]
rs2823462	0.83[CEU][hapmap]
rs2823463	0.83[CEU][hapmap]
rs2823471	1.00[CEU][hapmap]
rs2823472	0.91[CEU][hapmap]
rs2823478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2823481	0.82[CHB][hapmap]
rs2823484	0.82[CHB][hapmap]
rs2823489	0.91[CEU][hapmap]
rs2823491	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2823493	1.00[CEU][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes]
rs2823495	0.94[EUR][1000 genomes]
rs2823496	0.94[EUR][1000 genomes]
rs2823497	0.94[EUR][1000 genomes]
rs2823498	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2823499	1.00[CEU][hapmap];0.85[JPT][hapmap];0.95[EUR][1000 genomes]
rs2823500	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2823504	0.91[CEU][hapmap]
rs2823505	0.95[EUR][1000 genomes]
rs2823510	0.81[EUR][1000 genomes]
rs2823511	0.81[EUR][1000 genomes]
rs2823513	0.83[EUR][1000 genomes]
rs3787577	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55806628	0.82[AMR][1000 genomes]
rs56333224	0.90[AMR][1000 genomes]
rs56410772	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56666611	0.80[EUR][1000 genomes]
rs57733106	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59084861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59420372	0.90[AMR][1000 genomes]
rs60529604	0.90[AMR][1000 genomes]
rs6517609	0.91[CEU][hapmap]
rs6517613	0.91[CEU][hapmap]
rs6517648	1.00[CEU][hapmap]
rs6517652	1.00[CEU][hapmap]
rs6517675	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7277807	0.83[CEU][hapmap]
rs7278428	0.83[CEU][hapmap]
rs7278727	0.93[EUR][1000 genomes]
rs7281511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7282314	0.82[AMR][1000 genomes]
rs7283707	1.00[CEU][hapmap]
rs7283764	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs73181987	0.82[AMR][1000 genomes]
rs73346766	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73346769	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73357260	0.80[EUR][1000 genomes]
rs8127158	0.91[CEU][hapmap]
rs8128073	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8128766	0.95[EUR][1000 genomes]
rs8133079	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8134327	0.91[CEU][hapmap]
rs9974210	0.95[EUR][1000 genomes]
rs9976815	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9977000	0.94[EUR][1000 genomes]
rs9977069	0.83[EUR][1000 genomes]
rs9981766	0.94[EUR][1000 genomes]
rs9983248	0.95[EUR][1000 genomes]
rs9983385	0.95[EUR][1000 genomes]
rs9983542	1.00[JPT][hapmap]
rs9983858	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1063035	chr21:17154222-17224344	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17151800-17191000	Weak transcription	NH-A	brain
2	chr21:17155200-17189800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr21:17155200-17197600	Weak transcription	Fetal Heart	heart
4	chr21:17155200-17199200	Weak transcription	Right Ventricle	heart
5	chr21:17155200-17203800	Weak transcription	Colon Smooth Muscle	Colon
6	chr21:17155200-17209800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr21:17155200-17252800	Weak transcription	Fetal Brain Male	brain
8	chr21:17169000-17194200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr21:17174400-17193000	Weak transcription	NHEK	skin
10	chr21:17175800-17189800	Weak transcription	NHLF	lung
11	chr21:17176000-17198200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr21:17177200-17189800	Weak transcription	Pancreas	Pancrea
13	chr21:17177200-17208800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr21:17177600-17190000	Weak transcription	Brain Anterior Caudate	brain
15	chr21:17178400-17248200	Weak transcription	Esophagus	oesophagus
16	chr21:17178400-17252800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr21:17178800-17211400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr21:17179800-17192400	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr21:17180200-17189800	Weak transcription	Left Ventricle	heart
20	chr21:17180400-17193000	Weak transcription	NHDF-Ad	bronchial
21	chr21:17180600-17191200	Weak transcription	HMEC	breast
22	chr21:17180800-17199200	Weak transcription	HSMMtube	muscle
23	chr21:17182400-17227800	Weak transcription	Psoas Muscle	Psoas
24	chr21:17183200-17189600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr21:17183400-17190000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr21:17183400-17192600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr21:17183400-17192800	Weak transcription	Osteobl	bone
28	chr21:17184000-17189400	Weak transcription	HUVEC	blood vessel
29	chr21:17184000-17203800	Weak transcription	Brain Hippocampus Middle	brain
30	chr21:17184000-17209800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr21:17184200-17189800	Weak transcription	HSMM	muscle
32	chr21:17184600-17192200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr21:17185000-17189200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr21:17185000-17190600	Strong transcription	Primary T cells from cord blood	blood
35	chr21:17185200-17190400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr21:17185800-17190600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr21:17185800-17194200	Weak transcription	Hela-S3	cervix
38	chr21:17186200-17204200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr21:17186400-17189800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr21:17187000-17194000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr21:17187200-17189000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr21:17187200-17189200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
43	chr21:17187200-17192000	Strong transcription	Duodenum Mucosa	Duodenum
44	chr21:17187200-17192000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr21:17187400-17190200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr21:17187400-17192600	Strong transcription	Adipose Nuclei	Adipose
47	chr21:17187400-17192600	Strong transcription	Placenta	Placenta
48	chr21:17187400-17208800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr21:17187600-17189000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr21:17187600-17189800	Weak transcription	Spleen	Spleen

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