Variant report

Variant	rs17241481
Chromosome Location	chr21:17240509-17240510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17234653..17237049-chr21:17237537..17240783,4	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1022457	0.81[EUR][1000 genomes]
rs10482875	0.83[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes]
rs10482876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11910884	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs1543299	0.91[CEU][hapmap]
rs17241395	1.00[JPT][hapmap]
rs17241409	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17241416	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17241423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17241430	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs17241444	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17241460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17275511	0.98[EUR][1000 genomes]
rs17307120	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs17307170	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17307176	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[EUR][1000 genomes]
rs17307190	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17307197	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17307204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2026853	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2205585	0.94[EUR][1000 genomes]
rs2205588	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2205589	0.90[EUR][1000 genomes]
rs2223176	0.94[EUR][1000 genomes]
rs2242676	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2242680	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2242681	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2245574	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs2404000	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2404001	0.83[CEU][hapmap]
rs2823455	0.91[CEU][hapmap]
rs2823457	0.89[JPT][hapmap]
rs2823462	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs2823463	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs2823471	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2823472	0.91[CEU][hapmap]
rs2823478	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2823481	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2823484	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2823489	0.91[CEU][hapmap]
rs2823491	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2823493	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2823495	0.94[EUR][1000 genomes]
rs2823496	0.94[EUR][1000 genomes]
rs2823497	0.94[EUR][1000 genomes]
rs2823498	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2823499	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2823500	1.00[CEU][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes]
rs2823504	0.91[CEU][hapmap]
rs2823505	0.95[EUR][1000 genomes]
rs2823510	0.81[EUR][1000 genomes]
rs2823511	0.81[EUR][1000 genomes]
rs2823513	0.83[EUR][1000 genomes]
rs3787577	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56333224	0.80[AMR][1000 genomes]
rs56410772	0.84[AMR][1000 genomes]
rs56666611	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57733106	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59084861	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59420372	0.80[AMR][1000 genomes]
rs60529604	0.80[AMR][1000 genomes]
rs6517609	0.91[CEU][hapmap]
rs6517613	0.91[CEU][hapmap]
rs6517648	1.00[CEU][hapmap]
rs6517652	1.00[CEU][hapmap]
rs6517675	0.95[EUR][1000 genomes]
rs7277807	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs7278428	0.83[CEU][hapmap]
rs7278727	0.93[EUR][1000 genomes]
rs7281511	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[EUR][1000 genomes]
rs7283707	1.00[CEU][hapmap]
rs7283764	0.83[CEU][hapmap]
rs73346766	0.95[EUR][1000 genomes]
rs73346769	0.97[EUR][1000 genomes]
rs73357260	0.80[EUR][1000 genomes]
rs8127158	0.91[CEU][hapmap]
rs8128073	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8128766	0.95[EUR][1000 genomes]
rs8133079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8134327	0.91[CEU][hapmap]
rs9974210	0.95[EUR][1000 genomes]
rs9976815	0.94[EUR][1000 genomes]
rs9977000	0.94[EUR][1000 genomes]
rs9977069	0.83[EUR][1000 genomes]
rs9981766	0.94[EUR][1000 genomes]
rs9983248	0.95[EUR][1000 genomes]
rs9983385	0.95[EUR][1000 genomes]
rs9983858	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17155200-17252800	Weak transcription	Fetal Brain Male	brain
2	chr21:17178400-17248200	Weak transcription	Esophagus	oesophagus
3	chr21:17178400-17252800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr21:17188200-17246800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr21:17188400-17247200	Weak transcription	Ovary	ovary
6	chr21:17188400-17253200	Weak transcription	Fetal Brain Female	brain
7	chr21:17188800-17247000	Weak transcription	Brain Germinal Matrix	brain
8	chr21:17188800-17252600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr21:17190200-17245400	Weak transcription	Lung	lung
10	chr21:17190200-17247200	Weak transcription	Pancreas	Pancrea
11	chr21:17190400-17247200	Weak transcription	Spleen	Spleen
12	chr21:17190400-17247400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr21:17198000-17248000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr21:17199800-17246800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr21:17199800-17247200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr21:17200800-17245200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr21:17201400-17245400	Weak transcription	Fetal Stomach	stomach
18	chr21:17204400-17246400	Weak transcription	Brain Angular Gyrus	brain
19	chr21:17204400-17246800	Weak transcription	Brain Anterior Caudate	brain
20	chr21:17204600-17247800	Weak transcription	HepG2	liver
21	chr21:17204600-17252800	Weak transcription	Brain Hippocampus Middle	brain
22	chr21:17210400-17252600	Weak transcription	Aorta	Aorta
23	chr21:17210600-17245400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr21:17210600-17247200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr21:17211000-17245400	Weak transcription	Fetal Intestine Small	intestine
26	chr21:17211000-17246600	Weak transcription	Colon Smooth Muscle	Colon
27	chr21:17214200-17245400	Weak transcription	Gastric	stomach
28	chr21:17215000-17240600	Weak transcription	Fetal Muscle Leg	muscle
29	chr21:17215000-17240600	Weak transcription	HSMMtube	muscle
30	chr21:17215000-17245200	Weak transcription	Fetal Kidney	kidney
31	chr21:17215000-17245400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr21:17215200-17241000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr21:17215200-17245400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr21:17215600-17241200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr21:17215600-17252200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr21:17221000-17252800	Weak transcription	Thymus	Thymus
37	chr21:17222000-17246600	Weak transcription	HMEC	breast
38	chr21:17222200-17252600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr21:17223000-17257200	Weak transcription	NHLF	lung
40	chr21:17223400-17246800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr21:17223600-17246600	Weak transcription	Osteobl	bone
42	chr21:17223600-17264400	Weak transcription	NHEK	skin
43	chr21:17224800-17244200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr21:17225200-17252800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr21:17228200-17245800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr21:17228200-17246800	Weak transcription	NHDF-Ad	bronchial
47	chr21:17228200-17256800	Weak transcription	Small Intestine	intestine
48	chr21:17228400-17241200	Weak transcription	Left Ventricle	heart
49	chr21:17228400-17243000	Weak transcription	GM12878-XiMat	blood
50	chr21:17228400-17252800	Weak transcription	Fetal Heart	heart

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