Variant report

Variant	rs8128073
Chromosome Location	chr21:17258746-17258747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17256191..17258511-chr21:17258542..17261330,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-USP25-1	chr21:17256944-17267308	NONHSAT081216

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10482876	0.82[EUR][1000 genomes]
rs11910884	0.92[EUR][1000 genomes]
rs17241409	0.83[EUR][1000 genomes]
rs17241416	0.82[EUR][1000 genomes]
rs17241423	0.80[EUR][1000 genomes]
rs17241430	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17241444	0.86[EUR][1000 genomes]
rs17241460	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17241481	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17275511	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17307170	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17307176	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17307190	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17307197	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17307204	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2026853	0.88[EUR][1000 genomes]
rs2205585	0.92[EUR][1000 genomes]
rs2205588	0.98[EUR][1000 genomes]
rs2205589	0.89[EUR][1000 genomes]
rs2223176	0.92[EUR][1000 genomes]
rs2242676	0.83[EUR][1000 genomes]
rs2242680	0.98[EUR][1000 genomes]
rs2242681	0.98[EUR][1000 genomes]
rs2245574	0.92[EUR][1000 genomes]
rs2404000	0.98[EUR][1000 genomes]
rs2823478	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2823491	0.89[EUR][1000 genomes]
rs2823493	0.92[EUR][1000 genomes]
rs2823495	0.92[EUR][1000 genomes]
rs2823496	0.92[EUR][1000 genomes]
rs2823497	0.92[EUR][1000 genomes]
rs2823498	0.97[EUR][1000 genomes]
rs2823499	0.94[EUR][1000 genomes]
rs2823500	0.87[EUR][1000 genomes]
rs2823505	0.94[EUR][1000 genomes]
rs2823513	0.81[EUR][1000 genomes]
rs3787577	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57733106	0.82[EUR][1000 genomes]
rs59084861	0.98[EUR][1000 genomes]
rs6517675	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7278727	0.91[EUR][1000 genomes]
rs7281511	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73346766	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73346769	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8128766	0.94[EUR][1000 genomes]
rs8133079	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9974210	0.94[EUR][1000 genomes]
rs9976815	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9977000	0.92[EUR][1000 genomes]
rs9977069	0.81[EUR][1000 genomes]
rs9981766	0.92[EUR][1000 genomes]
rs9983248	0.94[EUR][1000 genomes]
rs9983385	0.94[EUR][1000 genomes]
rs9983858	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17223600-17264400	Weak transcription	NHEK	skin
2	chr21:17245400-17270400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr21:17246200-17261600	Weak transcription	Right Ventricle	heart
4	chr21:17246400-17263400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr21:17248200-17262400	Weak transcription	Pancreas	Pancrea
6	chr21:17251400-17259000	Weak transcription	NHDF-Ad	bronchial
7	chr21:17252200-17264600	Weak transcription	Hela-S3	cervix
8	chr21:17253000-17259200	Weak transcription	Aorta	Aorta
9	chr21:17253000-17263400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr21:17253000-17268200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr21:17253200-17259000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr21:17253200-17259400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr21:17253200-17260400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr21:17253200-17263400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr21:17253200-17264600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr21:17253200-17268000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr21:17253200-17268000	Weak transcription	Left Ventricle	heart
18	chr21:17253200-17269000	Weak transcription	Psoas Muscle	Psoas
19	chr21:17253400-17259800	Weak transcription	HSMM	muscle
20	chr21:17253400-17261600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr21:17253400-17267800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr21:17253400-17269400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr21:17253600-17267200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr21:17253800-17259600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr21:17254400-17262600	Weak transcription	Placenta	Placenta
26	chr21:17254800-17259400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr21:17254800-17262200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr21:17255200-17262200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr21:17255400-17258800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr21:17255400-17258800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr21:17255400-17259000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr21:17255400-17259600	Weak transcription	Fetal Heart	heart
33	chr21:17255400-17260000	Weak transcription	Liver	Liver
34	chr21:17255400-17260600	Weak transcription	Primary T cells from cord blood	blood
35	chr21:17255400-17267200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr21:17255400-17267400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr21:17255400-17269600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr21:17255600-17261800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr21:17255600-17262200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr21:17255600-17262400	Weak transcription	HUVEC	blood vessel
41	chr21:17255600-17264400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr21:17255600-17267200	Weak transcription	Fetal Lung	lung
43	chr21:17255800-17259000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr21:17255800-17262400	Weak transcription	Fetal Thymus	thymus
45	chr21:17255800-17268000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr21:17255800-17268000	Weak transcription	Ovary	ovary
47	chr21:17256200-17259400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr21:17256200-17259800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr21:17256400-17267200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr21:17256600-17259000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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