Variant report

Variant	rs56333224
Chromosome Location	chr21:17089679-17089680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:17087926..17089918-chr21:17092657..17095382,2	K562	blood:
2	chr21:17084590..17087490-chr21:17087588..17090287,2	K562	blood:
3	chr21:17086804..17089683-chr21:17199530..17202336,2	K562	blood:
4	chr21:17083757..17086090-chr21:17088787..17091203,2	K562	blood:
5	chr21:17087356..17090819-chr21:17092657..17096162,4	K562	blood:
6	chr21:17088463..17090416-chr21:17100632..17102945,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155313	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10482875	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10482876	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1543299	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17241395	0.92[ASN][1000 genomes]
rs17241409	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17241416	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17241423	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17241430	0.89[EUR][1000 genomes]
rs17241444	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17241460	0.80[AMR][1000 genomes]
rs17241481	0.80[AMR][1000 genomes]
rs17307120	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17307170	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17307190	0.90[AMR][1000 genomes]
rs17307204	0.80[AMR][1000 genomes]
rs2205588	0.90[AMR][1000 genomes]
rs2242676	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2242680	0.90[AMR][1000 genomes]
rs2242681	0.90[AMR][1000 genomes]
rs2404000	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2823457	0.88[ASN][1000 genomes]
rs2823462	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823463	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2823471	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2823478	0.89[EUR][1000 genomes]
rs2823481	0.89[ASN][1000 genomes]
rs2823483	0.89[ASN][1000 genomes]
rs2823484	0.89[ASN][1000 genomes]
rs2823491	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2823498	0.83[ASN][1000 genomes]
rs28627435	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3787577	0.90[AMR][1000 genomes]
rs4580465	0.84[ASN][1000 genomes]
rs55806628	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56299770	0.94[EUR][1000 genomes]
rs56410772	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56666611	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57733106	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57737796	0.85[EUR][1000 genomes]
rs59084861	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59420372	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60191002	0.94[EUR][1000 genomes]
rs60360638	0.83[EUR][1000 genomes]
rs60529604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7277807	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7278428	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7282314	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7283764	0.94[EUR][1000 genomes]
rs73181987	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73355479	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73357260	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73892510	0.92[ASN][1000 genomes]
rs8133079	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758530	chr21:16912646-17096678	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2758810	chr21:16912646-17096678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762093	chr21:16948663-17145770	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1064683	chr21:16954570-17145758	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv459099	chr21:16956866-17145011	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv587076	chr21:16956866-17145011	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1062105	chr21:16956885-17141961	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv544380	chr21:16956885-17141961	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1059500	chr21:16957752-17145758	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	esv2830057	chr21:16960590-17113148	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv1060139	chr21:17057044-17100275	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
12	esv2760692	chr21:17084961-17091368	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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