Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1083694	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs11965487	1.00[YRI][hapmap]
rs1512234	0.89[AFR][1000 genomes]
rs2050918	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs314198	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs314214	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs701653	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs701654	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs701655	0.92[AFR][1000 genomes]
rs779456	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779459	0.92[AFR][1000 genomes]
rs779461	0.92[AFR][1000 genomes]
rs779464	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779466	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779467	0.91[AFR][1000 genomes]
rs779468	0.95[EUR][1000 genomes]
rs779470	0.89[AFR][1000 genomes]
rs779471	0.95[EUR][1000 genomes]
rs779473	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs779474	0.92[AFR][1000 genomes]
rs779481	0.84[CEU][hapmap]
rs779489	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9454720	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv966625	chr6:69958100-69964349	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69946200-69960400	Weak transcription	Brain Anterior Caudate	brain
2	chr6:69948600-69970200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69955400-69959200	Weak transcription	Aorta	Aorta

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