Variant report

Variant	rs779461
Chromosome Location	chr6:69944886-69944887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11962594	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11965487	1.00[CEU][hapmap]
rs1283464	1.00[CEU][hapmap]
rs1293154	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1297415	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13195278	1.00[CEU][hapmap]
rs1410699	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1512234	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16900620	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1706838	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1928060	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs314208	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs314216	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs35829738	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6919623	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs701655	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs701656	0.89[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71557617	0.92[EUR][1000 genomes]
rs728299	0.92[AFR][1000 genomes]
rs7751967	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs779455	0.90[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs779459	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs779462	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs779464	0.87[YRI][hapmap]
rs779467	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs779470	0.90[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs779474	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779483	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs779487	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs779492	0.86[EUR][1000 genomes]
rs9346271	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69942200-69945200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:69942200-69946200	Active TSS	Brain Anterior Caudate	brain
3	chr6:69942400-69945000	Active TSS	Brain Angular Gyrus	brain
4	chr6:69942400-69945600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr6:69942600-69945200	Active TSS	Fetal Brain Female	brain
6	chr6:69943400-69946200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:69943400-69946400	Weak transcription	Fetal Lung	lung
8	chr6:69943400-69946800	Weak transcription	Brain Substantia Nigra	brain
9	chr6:69943400-69947800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:69943400-69947800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:69943400-69948000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:69943600-69945000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:69944000-69950000	Weak transcription	Brain Germinal Matrix	brain
14	chr6:69944800-69945600	Enhancers	Fetal Brain Male	brain
15	chr6:69944800-69949800	Weak transcription	Brain Cingulate Gyrus	brain

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