Variant report

Variant	rs13195278
Chromosome Location	chr6:70018250-70018251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70008651..70011416-chr6:70016627..70019058,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11962594	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11965487	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs1283464	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1293154	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1297415	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1410699	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1512234	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16900620	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.96[EUR][1000 genomes]
rs1706838	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1928060	0.88[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs314208	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs314216	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs35829738	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6919623	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs701655	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs701656	0.88[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71557617	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71557618	0.84[AMR][1000 genomes]
rs7751967	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs779455	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs779459	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779461	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779462	1.00[CEU][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs779467	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779470	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779474	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs779483	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs779487	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs779492	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9346271	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886139	chr6:69979989-70041922	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv515657	chr6:70007450-70027419	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv527172	chr6:70007450-70029980	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv603634	chr6:70007450-70060225	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv463149	chr6:70007450-70097588	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv603635	chr6:70007450-70097588	Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3472775	chr6:70013973-70018502	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3472773	chr6:70014019-70018479	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3472772	chr6:70014047-70018441	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv17912	chr6:70014088-70018507	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3472776	chr6:70014116-70018395	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13195278	BAI3	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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