Variant report

Variant	rs1706838
Chromosome Location	chr6:69871464-69871465
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11962594	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11965487	0.89[CEU][hapmap]
rs1283464	0.89[CEU][hapmap]
rs1293154	0.84[EUR][1000 genomes]
rs1297415	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs13195278	0.89[CEU][hapmap]
rs1410699	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs1512234	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16900620	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs1928060	0.80[EUR][1000 genomes]
rs314208	0.90[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs314216	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35829738	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6919623	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs701655	0.90[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs701656	0.93[EUR][1000 genomes]
rs71557617	0.85[EUR][1000 genomes]
rs7751967	0.81[EUR][1000 genomes]
rs779455	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs779459	0.90[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs779461	0.90[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs779462	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs779464	0.85[YRI][hapmap]
rs779467	0.89[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs779470	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs779474	0.90[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs779483	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779487	0.90[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779492	0.83[EUR][1000 genomes]
rs9346271	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69856400-69874000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:69860800-69876200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69869600-69872400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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