Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69887408..69889888-chr6:69893862..69895368,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11962594	0.85[EUR][1000 genomes]
rs1297415	0.82[EUR][1000 genomes]
rs1512234	0.86[EUR][1000 genomes]
rs16900620	0.81[EUR][1000 genomes]
rs1706838	0.83[EUR][1000 genomes]
rs314201	0.82[EUR][1000 genomes]
rs314208	0.83[EUR][1000 genomes]
rs314216	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35829738	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6919623	0.81[EUR][1000 genomes]
rs701655	0.86[EUR][1000 genomes]
rs701656	0.86[EUR][1000 genomes]
rs71557617	0.83[EUR][1000 genomes]
rs779459	0.86[EUR][1000 genomes]
rs779461	0.86[EUR][1000 genomes]
rs779462	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs779467	0.86[EUR][1000 genomes]
rs779470	0.86[EUR][1000 genomes]
rs779474	0.85[EUR][1000 genomes]
rs779483	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs779487	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69876800-69889800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69877000-69891000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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