Variant report

Variant	rs35829738
Chromosome Location	chr6:70010252-70010253
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70008651..70011416-chr6:70016627..70019058,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11962594	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1293154	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1297415	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1410699	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1512234	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16900620	0.97[EUR][1000 genomes]
rs1706838	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1928060	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs314208	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs314216	0.89[EUR][1000 genomes]
rs6919623	0.97[EUR][1000 genomes]
rs701655	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs701656	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71557617	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71557618	0.84[AMR][1000 genomes]
rs7751967	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs779455	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs779459	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs779461	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs779462	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779467	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs779470	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs779474	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs779483	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs779487	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs779492	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9346271	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886139	chr6:69979989-70041922	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv515657	chr6:70007450-70027419	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv527172	chr6:70007450-70029980	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv603634	chr6:70007450-70060225	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv463149	chr6:70007450-70097588	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv603635	chr6:70007450-70097588	Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69994400-70015400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:70003600-70014600	Weak transcription	Brain Angular Gyrus	brain

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