Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70083810..70086778-chr6:70090540..70092486,2	K562	blood:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11962594	0.87[EUR][1000 genomes]
rs11965487	0.88[CEU][hapmap]
rs1283464	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs1293154	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1297415	0.89[CEU][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13195278	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs1410699	0.89[CEU][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1512234	0.84[EUR][1000 genomes]
rs16900620	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs1706838	0.80[EUR][1000 genomes]
rs314208	0.80[EUR][1000 genomes]
rs35829738	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6919623	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs701655	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs701656	0.86[EUR][1000 genomes]
rs71557617	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71557618	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7751967	0.89[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs779455	0.80[CEU][hapmap]
rs779459	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs779461	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs779462	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs779467	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs779470	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs779474	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs779483	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs779487	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs9346271	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv463149	chr6:70007450-70097588	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv603635	chr6:70007450-70097588	Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70054600-70098600	Weak transcription	Brain Anterior Caudate	brain
2	chr6:70054600-70100600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:70081000-70108000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:70081200-70094200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:70081200-70095200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:70082200-70098600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:70083600-70093800	Weak transcription	Brain Germinal Matrix	brain
8	chr6:70087400-70094600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:70088200-70099600	Weak transcription	Small Intestine	intestine

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