Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr6:69940711-69943670	SK-N-SH	brain:	n/a	n/a
2	GATA3	chr6:69941035-69942186	SH-SY5Y	brain:	n/a	chr6:69941455-69941476 chr6:69941462-69941469 chr6:69941462-69941473 chr6:69941451-69941468 chr6:69941462-69941469 chr6:69941462-69941469

Variant related genes	Relation type
BAI3	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1083694	0.94[CEU][hapmap];0.90[TSI][hapmap];0.96[EUR][1000 genomes]
rs2050918	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs314198	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs314214	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs701653	1.00[CEU][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs701654	0.94[CEU][hapmap];0.99[EUR][1000 genomes]
rs701655	0.87[YRI][hapmap]
rs728299	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779456	1.00[CEU][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs779459	0.85[YRI][hapmap]
rs779461	0.87[YRI][hapmap]
rs779466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs779467	0.87[YRI][hapmap]
rs779468	0.99[EUR][1000 genomes]
rs779470	0.85[YRI][hapmap]
rs779471	0.99[EUR][1000 genomes]
rs779473	0.83[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.90[TSI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs779474	0.87[YRI][hapmap]
rs779481	0.84[CEU][hapmap];0.90[TSI][hapmap]
rs779487	0.87[YRI][hapmap]
rs779489	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454720	1.00[CEU][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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