Variant report

Variant	rs72847469
Chromosome Location	chr11:8025182-8025183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1043738	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56295342	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72847449	1.00[EUR][1000 genomes]
rs72847456	1.00[EUR][1000 genomes]
rs72847468	1.00[EUR][1000 genomes]
rs72847472	1.00[EUR][1000 genomes]
rs7929026	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7934786	0.84[AFR][1000 genomes]
rs7939213	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7947944	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8010800-8033400	Weak transcription	Right Atrium	heart
2	chr11:8016600-8025600	Weak transcription	Fetal Heart	heart
3	chr11:8018000-8031800	Weak transcription	Aorta	Aorta
4	chr11:8018400-8032000	Weak transcription	Right Ventricle	heart
5	chr11:8020000-8028200	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:8020000-8033000	Weak transcription	NHDF-Ad	bronchial
7	chr11:8020200-8025400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:8020200-8025400	Weak transcription	Brain Germinal Matrix	brain
9	chr11:8020200-8026600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:8020600-8025200	Weak transcription	HSMMtube	muscle
11	chr11:8020800-8026400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:8022000-8025200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:8022000-8025200	Weak transcription	Brain Anterior Caudate	brain
14	chr11:8022000-8025400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:8022000-8025400	Weak transcription	Osteobl	bone
16	chr11:8022000-8026000	Weak transcription	Left Ventricle	heart
17	chr11:8022000-8026200	Weak transcription	Primary T cells from cord blood	blood
18	chr11:8022000-8027000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:8022000-8027400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:8022000-8028200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:8022000-8033200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:8022000-8033200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:8022000-8033400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:8022200-8025200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:8022200-8025200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:8022200-8025200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:8022200-8025400	Weak transcription	Fetal Lung	lung
28	chr11:8022200-8025600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:8022200-8025600	Weak transcription	NHLF	lung
30	chr11:8022200-8027400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:8022200-8028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:8022200-8033600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:8022200-8037200	Weak transcription	HMEC	breast
34	chr11:8022400-8025400	Weak transcription	Primary B cells from cord blood	blood
35	chr11:8022400-8025400	Weak transcription	Liver	Liver
36	chr11:8022800-8033000	Weak transcription	HSMM	muscle

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