Variant report

Variant	rs7939213
Chromosome Location	chr11:8021810-8021811
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8021034..8023077-chr11:8027438..8029926,2	K562	blood:
2	chr11:8010094..8012812-chr11:8018945..8021988,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1043738	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56295342	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72847449	0.97[EUR][1000 genomes]
rs72847456	0.97[EUR][1000 genomes]
rs72847468	0.97[EUR][1000 genomes]
rs72847469	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72847472	0.97[EUR][1000 genomes]
rs7929026	0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7947944	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8010600-8022000	Strong transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:8010600-8022400	Strong transcription	Primary B cells from cord blood	blood
3	chr11:8010800-8022000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:8010800-8022000	Strong transcription	Primary B cells from peripheral blood	blood
5	chr11:8010800-8022000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:8010800-8033400	Weak transcription	Right Atrium	heart
7	chr11:8011200-8022800	Strong transcription	HSMM	muscle
8	chr11:8011400-8022000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:8011400-8022000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:8011400-8022200	Strong transcription	HMEC	breast
11	chr11:8011600-8022200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:8011800-8022000	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:8011800-8022000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:8011800-8022000	Strong transcription	Osteobl	bone
15	chr11:8012000-8022000	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr11:8012000-8022200	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr11:8012200-8022000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr11:8012800-8022000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:8012800-8022000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:8012800-8022000	Strong transcription	Duodenum Mucosa	Duodenum
21	chr11:8012800-8022000	Strong transcription	Left Ventricle	heart
22	chr11:8012800-8022200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:8012800-8022200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:8012800-8022200	Strong transcription	Fetal Lung	lung
25	chr11:8012800-8022200	Strong transcription	GM12878-XiMat	blood
26	chr11:8012800-8022200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr11:8012800-8022400	Strong transcription	Liver	Liver
28	chr11:8012800-8022600	Strong transcription	A549	lung
29	chr11:8012800-8022800	Strong transcription	Fetal Muscle Leg	muscle
30	chr11:8013000-8022000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:8013000-8022000	Strong transcription	Primary T cells from cord blood	blood
32	chr11:8013000-8022000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:8013000-8022000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:8013000-8022200	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:8013200-8022000	Strong transcription	Lung	lung
36	chr11:8013200-8022000	Strong transcription	Thymus	Thymus
37	chr11:8013200-8022400	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:8013400-8022000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:8013400-8022000	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:8016600-8025600	Weak transcription	Fetal Heart	heart
41	chr11:8016800-8022000	Strong transcription	Adipose Nuclei	Adipose
42	chr11:8017200-8022200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:8017200-8022200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:8017800-8024800	Weak transcription	Esophagus	oesophagus
45	chr11:8018000-8031800	Weak transcription	Aorta	Aorta
46	chr11:8018400-8032000	Weak transcription	Right Ventricle	heart
47	chr11:8019000-8023200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:8019400-8024600	Weak transcription	Fetal Brain Male	brain
49	chr11:8019600-8022800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:8019800-8022000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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