Variant report

Variant	rs72864651
Chromosome Location	chr4:77409216-77409217
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77407501..77409326-chr4:77411109..77412984,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs72862912	1.00[AFR][1000 genomes]
rs72862952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72862990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864636	1.00[AMR][1000 genomes]
rs72866508	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757941	chr4:77264596-77417457	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2759262	chr4:77264596-77455405	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757069	chr4:77392092-77455405	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77405600-77411200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:77406000-77409400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:77406800-77417200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:77407000-77410000	Weak transcription	NH-A	brain
5	chr4:77407000-77416600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:77407000-77419600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:77407200-77409400	Enhancers	Fetal Intestine Large	intestine
8	chr4:77407400-77409600	Weak transcription	Fetal Heart	heart
9	chr4:77407400-77410000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:77407400-77415600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:77407400-77421000	Weak transcription	HMEC	breast
12	chr4:77407800-77410200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:77408000-77409600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:77408000-77410000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:77408000-77421200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:77408400-77410200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:77408600-77410800	Enhancers	Liver	Liver
18	chr4:77408600-77413200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:77408800-77409800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:77408800-77410000	Weak transcription	Fetal Intestine Small	intestine
21	chr4:77409200-77410800	Enhancers	Colon Smooth Muscle	Colon

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