Variant report
| Variant | rs72862990 |
|---|---|
| Chromosome Location | chr4:77326395-77326396 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:77325006..77326566-chr4:77331243..77333251,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs57389468 | 1.00[AMR][1000 genomes] |
| rs58041283 | 1.00[AMR][1000 genomes] |
| rs58343507 | 1.00[AMR][1000 genomes] |
| rs61494828 | 1.00[AMR][1000 genomes] |
| rs72858504 | 1.00[AMR][1000 genomes] |
| rs72858514 | 1.00[AMR][1000 genomes] |
| rs72858534 | 1.00[AMR][1000 genomes] |
| rs72858537 | 1.00[AMR][1000 genomes] |
| rs72858539 | 1.00[AMR][1000 genomes] |
| rs72858541 | 1.00[AMR][1000 genomes] |
| rs72858543 | 1.00[AMR][1000 genomes] |
| rs72858544 | 1.00[AMR][1000 genomes] |
| rs72858547 | 1.00[AMR][1000 genomes] |
| rs72858548 | 1.00[AMR][1000 genomes] |
| rs72858559 | 1.00[AMR][1000 genomes] |
| rs72858560 | 1.00[AMR][1000 genomes] |
| rs72858564 | 1.00[AMR][1000 genomes] |
| rs72858565 | 1.00[AMR][1000 genomes] |
| rs72858567 | 1.00[AMR][1000 genomes] |
| rs72858568 | 1.00[AMR][1000 genomes] |
| rs72858572 | 1.00[AMR][1000 genomes] |
| rs72858576 | 1.00[AMR][1000 genomes] |
| rs72858580 | 1.00[AMR][1000 genomes] |
| rs72858584 | 1.00[AMR][1000 genomes] |
| rs72858586 | 1.00[AMR][1000 genomes] |
| rs72858588 | 1.00[AMR][1000 genomes] |
| rs72858593 | 1.00[AMR][1000 genomes] |
| rs72858595 | 1.00[AMR][1000 genomes] |
| rs72862912 | 1.00[AFR][1000 genomes] |
| rs72862952 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72864608 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72864636 | 1.00[AMR][1000 genomes] |
| rs72864651 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72866508 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757941 | chr4:77264596-77417457 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv2759262 | chr4:77264596-77455405 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:77314800-77326800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr4:77321200-77341600 | Weak transcription | Aorta | Aorta |
| 3 | chr4:77323600-77337200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
