Variant report

Variant	rs72858595
Chromosome Location	chr4:77167563-77167564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77165685..77168329-chr4:77226063..77227716,2	MCF-7	breast:
2	chr4:77100761..77101387-chr4:77166867..77167817,2	MCF-7	breast:
3	chr4:77154267..77157230-chr4:77166961..77169632,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118804	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs57389468	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58041283	1.00[AMR][1000 genomes]
rs58343507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60983927	1.00[AMR][1000 genomes]
rs61494828	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858504	1.00[AMR][1000 genomes]
rs72858514	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858534	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858537	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858539	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858541	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858543	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858544	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858547	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858548	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858559	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858560	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858564	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858565	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858568	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858572	1.00[AMR][1000 genomes]
rs72858576	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858580	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858584	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858588	1.00[AMR][1000 genomes]
rs72858593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72862952	1.00[AMR][1000 genomes]
rs72862990	1.00[AMR][1000 genomes]
rs72864608	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760851	chr4:77164549-77185144	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv516357	chr4:77167242-77178379	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2421530	chr4:77167242-77178676	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77166200-77167600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr4:77166800-77167600	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links