Variant report

Variant	rs57389468
Chromosome Location	chr4:77158871-77158872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77157429..77161851-chr4:77161856..77166558,5	MCF-7	breast:
2	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189157	Chromatin interaction
ENSG00000138760	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs58041283	1.00[AMR][1000 genomes]
rs58343507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60983927	1.00[AMR][1000 genomes]
rs61494828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858504	1.00[AMR][1000 genomes]
rs72858514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858560	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858572	1.00[AMR][1000 genomes]
rs72858576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858588	1.00[AMR][1000 genomes]
rs72858593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72862952	1.00[AMR][1000 genomes]
rs72862990	1.00[AMR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77154200-77159800	Enhancers	Stomach Mucosa	stomach
2	chr4:77156000-77159000	Weak transcription	Pancreas	Pancrea
3	chr4:77156000-77160000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:77156000-77163400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:77157000-77159400	Weak transcription	Colonic Mucosa	Colon
6	chr4:77157200-77159200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:77157800-77164400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:77158200-77159000	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr4:77158400-77159000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr4:77158800-77159400	Enhancers	Brain Angular Gyrus	brain
11	chr4:77158800-77159400	Enhancers	Psoas Muscle	Psoas
12	chr4:77158800-77159400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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