Variant report

Variant	rs72858564
Chromosome Location	chr4:77161183-77161184
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77157429..77161851-chr4:77161856..77166558,5	MCF-7	breast:
2	chr4:77153728..77158054-chr4:77159760..77162493,5	K562	blood:
3	chr4:77154403..77156525-chr4:77159760..77161520,2	K562	blood:
4	chr4:77155513..77160129-chr4:77161084..77164552,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SCARB2-1	chr4:77160787-77163175	NONHSAT096992

Variant related genes	Relation type
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs57389468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58041283	1.00[AMR][1000 genomes]
rs58343507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60983927	1.00[AMR][1000 genomes]
rs61494828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858504	1.00[AMR][1000 genomes]
rs72858514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858560	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858572	1.00[AMR][1000 genomes]
rs72858576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858588	1.00[AMR][1000 genomes]
rs72858593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72862952	1.00[AMR][1000 genomes]
rs72862990	1.00[AMR][1000 genomes]
rs72864608	1.00[AMR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77156000-77163400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:77157800-77164400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:77161000-77161600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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