Variant report

Variant	rs72858548
Chromosome Location	chr4:77157218-77157219
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:28)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:28 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF217	chr4:77157030-77157560	MCF-7	breast:	n/a	n/a
2	KAP1	chr4:77156724-77157259	K562	blood:	n/a	n/a
3	SP1	chr4:77157011-77157551	H1-hESC	embryonic stem cell:	n/a	n/a
4	TCF12	chr4:77157084-77157459	H1-hESC	embryonic stem cell:	n/a	n/a
5	JUND	chr4:77156853-77157623	HCT-116	colon:	n/a	n/a
6	SP1	chr4:77157046-77157581	H1-hESC	embryonic stem cell:	n/a	n/a
7	JUND	chr4:77156907-77157690	HCT-116	colon:	n/a	n/a
8	NR2F2	chr4:77157110-77157728	MCF-7	breast:	n/a	n/a
9	SP1	chr4:77156890-77157604	HCT-116	colon:	n/a	n/a
10	SIN3AK20	chr4:77156999-77157698	MCF-7	breast:	n/a	n/a
11	FOSL2	chr4:77157131-77157647	MCF-7	breast:	n/a	n/a
12	FOSL2	chr4:77157076-77157559	MCF-7	breast:	n/a	n/a
13	GATA3	chr4:77156854-77157846	MCF-7	breast:	n/a	n/a
14	JUND	chr4:77156998-77157625	MCF-7	breast:	n/a	n/a
15	CHD2	chr4:77157161-77157461	H1-hESC	embryonic stem cell:	n/a	n/a
16	NR3C1	chr4:77157200-77157438	ECC-1	luminal epithelium:	n/a	n/a
17	NFIC	chr4:77157017-77157508	ECC-1	luminal epithelium:	n/a	n/a
18	MYC	chr4:77157194-77157369	MCF10A-Er-Src	breast:	n/a	n/a
19	HDAC2	chr4:77157097-77157460	MCF-7	breast:	n/a	n/a
20	CEBPB	chr4:77156836-77157668	HCT-116	colon:	n/a	n/a
21	FOSL1	chr4:77157008-77157678	HCT-116	colon:	n/a	n/a
22	FOXM1	chr4:77156940-77157594	ECC-1	luminal epithelium:	n/a	n/a
23	GATA3	chr4:77156963-77157617	MCF-7	breast:	n/a	n/a
24	STAT3	chr4:77156975-77157332	MCF10A-Er-Src	breast:	n/a	n/a
25	TEAD4	chr4:77157044-77157606	ECC-1	luminal epithelium:	n/a	n/a
26	SP1	chr4:77156799-77157692	HCT-116	colon:	n/a	n/a
27	TCF7L2	chr4:77157116-77157593	MCF-7	breast:	n/a	n/a
28	FOXM1	chr4:77157047-77157731	MCF-7	breast:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:77140173..77141929-chr4:77155477..77157250,2	MCF-7	breast:
2	chr4:77154267..77157230-chr4:77166961..77169632,3	MCF-7	breast:
3	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
4	chr4:77131893..77139465-chr4:77152630..77158664,14	MCF-7	breast:

No data

Variant related genes	Relation type
FAM47E	TF binding region
ENSG00000138760	Chromatin interaction
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs57389468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58041283	1.00[AMR][1000 genomes]
rs58343507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60983927	1.00[AMR][1000 genomes]
rs61494828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858504	1.00[AMR][1000 genomes]
rs72858514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858560	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858572	1.00[AMR][1000 genomes]
rs72858576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858588	1.00[AMR][1000 genomes]
rs72858593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72862952	1.00[AMR][1000 genomes]
rs72862990	1.00[AMR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77154200-77159800	Enhancers	Stomach Mucosa	stomach
2	chr4:77155400-77158400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:77155800-77157600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:77155800-77158800	Weak transcription	Psoas Muscle	Psoas
5	chr4:77156000-77159000	Weak transcription	Pancreas	Pancrea
6	chr4:77156000-77160000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:77156000-77163400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:77156400-77157800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:77156600-77157800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:77156600-77157800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:77156600-77157800	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr4:77156600-77157800	Enhancers	HepG2	liver
13	chr4:77156800-77157600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:77156800-77157800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr4:77156800-77157800	Enhancers	HMEC	breast
16	chr4:77156800-77158800	Weak transcription	Placenta	Placenta
17	chr4:77157000-77157400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr4:77157000-77157800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:77157000-77159400	Weak transcription	Colonic Mucosa	Colon
20	chr4:77157200-77157400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr4:77157200-77157400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr4:77157200-77157600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr4:77157200-77157800	Enhancers	Fetal Intestine Large	intestine
24	chr4:77157200-77157800	Enhancers	NHEK	skin
25	chr4:77157200-77158200	Weak transcription	Fetal Intestine Small	intestine
26	chr4:77157200-77158400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:77157200-77158600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr4:77157200-77159200	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links