Variant report

Variant	rs72858543
Chromosome Location	chr4:77156868-77156869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr4:77156724-77157259	K562	blood:	n/a	n/a
2	JUND	chr4:77156853-77157623	HCT-116	colon:	n/a	n/a
3	GATA3	chr4:77156854-77157846	MCF-7	breast:	n/a	n/a
4	CEBPB	chr4:77156836-77157668	HCT-116	colon:	n/a	n/a
5	SP1	chr4:77156799-77157692	HCT-116	colon:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:77154636..77156996-chr4:77223567..77225179,2	MCF-7	breast:
2	chr4:77140173..77141929-chr4:77155477..77157250,2	MCF-7	breast:
3	chr4:77149994..77152737-chr4:77153466..77157199,4	MCF-7	breast:
4	chr4:77147821..77149709-chr4:77155389..77157207,2	K562	blood:
5	chr4:77154984..77156976-chr4:77172946..77174616,2	K562	blood:
6	chr4:77154267..77157230-chr4:77166961..77169632,3	MCF-7	breast:
7	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
8	chr4:77154639..77157033-chr4:77221120..77222872,2	MCF-7	breast:
9	chr4:77131893..77139465-chr4:77152630..77158664,14	MCF-7	breast:

No data

Variant related genes	Relation type
FAM47E	TF binding region
ENSG00000189157	Chromatin interaction
ENSG00000138760	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs57389468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58041283	1.00[AMR][1000 genomes]
rs58343507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60983927	1.00[AMR][1000 genomes]
rs61494828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858504	1.00[AMR][1000 genomes]
rs72858514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858560	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858572	1.00[AMR][1000 genomes]
rs72858576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858588	1.00[AMR][1000 genomes]
rs72858593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72862952	1.00[AMR][1000 genomes]
rs72862990	1.00[AMR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77154200-77159800	Enhancers	Stomach Mucosa	stomach
2	chr4:77155400-77158400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:77155600-77157000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:77155600-77157000	Enhancers	Colonic Mucosa	Colon
5	chr4:77155800-77157600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:77155800-77158800	Weak transcription	Psoas Muscle	Psoas
7	chr4:77156000-77157000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:77156000-77159000	Weak transcription	Pancreas	Pancrea
9	chr4:77156000-77160000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:77156000-77163400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:77156400-77157000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:77156400-77157000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:77156400-77157800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:77156600-77157200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:77156600-77157200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr4:77156600-77157800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr4:77156600-77157800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr4:77156600-77157800	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr4:77156600-77157800	Enhancers	HepG2	liver
20	chr4:77156800-77157000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr4:77156800-77157000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr4:77156800-77157000	Enhancers	A549	lung
23	chr4:77156800-77157000	Enhancers	Hela-S3	cervix
24	chr4:77156800-77157200	Enhancers	H9 Cell Line	embryonic stem cell
25	chr4:77156800-77157200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr4:77156800-77157200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr4:77156800-77157200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr4:77156800-77157200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:77156800-77157200	Enhancers	Liver	Liver
30	chr4:77156800-77157200	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr4:77156800-77157200	Flanking Active TSS	Fetal Intestine Large	intestine
32	chr4:77156800-77157200	Flanking Active TSS	Fetal Intestine Small	intestine
33	chr4:77156800-77157200	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr4:77156800-77157200	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr4:77156800-77157200	Flanking Active TSS	NHEK	skin
36	chr4:77156800-77157600	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr4:77156800-77157800	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr4:77156800-77157800	Enhancers	HMEC	breast
39	chr4:77156800-77158800	Weak transcription	Placenta	Placenta

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