Variant report

Variant	rs72864608
Chromosome Location	chr4:77354577-77354578
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77352099..77354858-chr4:77423504..77425776,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs72858564	1.00[AMR][1000 genomes]
rs72858565	1.00[AMR][1000 genomes]
rs72858567	1.00[AMR][1000 genomes]
rs72858568	1.00[AMR][1000 genomes]
rs72858572	1.00[AMR][1000 genomes]
rs72858576	1.00[AMR][1000 genomes]
rs72858580	1.00[AMR][1000 genomes]
rs72858584	1.00[AMR][1000 genomes]
rs72858586	1.00[AMR][1000 genomes]
rs72858588	1.00[AMR][1000 genomes]
rs72858593	1.00[AMR][1000 genomes]
rs72858595	1.00[AMR][1000 genomes]
rs72862912	1.00[AFR][1000 genomes]
rs72862952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72862990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864636	1.00[AMR][1000 genomes]
rs72864651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72866508	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757941	chr4:77264596-77417457	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2759262	chr4:77264596-77455405	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77344000-77356200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:77351200-77356000	Weak transcription	Liver	Liver
3	chr4:77352000-77355800	Weak transcription	Hela-S3	cervix
4	chr4:77352000-77356200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:77352000-77356200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:77352000-77356200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:77352200-77356200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:77352600-77355600	Weak transcription	Fetal Heart	heart
9	chr4:77353000-77356000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:77353400-77355600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:77353600-77355200	Weak transcription	Stomach Mucosa	stomach
12	chr4:77353800-77354800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:77353800-77355800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr4:77353800-77357000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:77354000-77354600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:77354000-77354600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr4:77354000-77354800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr4:77354000-77354800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:77354000-77356000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr4:77354000-77356000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr4:77354000-77356000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr4:77354200-77354800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr4:77354200-77356200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:77354400-77354600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:77354400-77355400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr4:77354400-77355600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:77354400-77356200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links