Variant report

Variant	rs72874012
Chromosome Location	chr6:55545970-55545971
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11752812	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753553	1.00[ASN][1000 genomes]
rs11754509	1.00[ASN][1000 genomes]
rs11756219	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756598	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758071	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759233	1.00[ASN][1000 genomes]
rs11961322	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13195454	1.00[ASN][1000 genomes]
rs228152	1.00[ASN][1000 genomes]
rs6923399	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72874020	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72874021	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72973115	1.00[ASN][1000 genomes]
rs72973134	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72973139	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72973142	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72973143	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975079	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975086	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975090	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975095	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72976261	1.00[ASN][1000 genomes]
rs72988047	1.00[ASN][1000 genomes]
rs72988067	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1026411	chr6:55372845-55653498	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885905	chr6:55539010-55596618	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv885906	chr6:55539010-55612431	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv885907	chr6:55539010-55621377	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv885908	chr6:55539010-55625041	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv885909	chr6:55539010-55674338	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55544000-55547200	Enhancers	Fetal Lung	lung
2	chr6:55544000-55547800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:55545600-55546400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:55545800-55551000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links